Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01232 ATGGATGGACGGAACCAAAAACGACGTCGTGGTCGTCGCTATGGTAAAGCAAAGAGTAAAAGCAAGTGGGAGAGATGCTATTCAACACAACATGAGATGGATCGTGAAGACTATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGAAGTAATGGAATTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTCCCCAGGATGGTAGCTTGGATTCTCATACAACTTTGAATAGAAAGGATGATTTGGAACTGGAGGTATTTGTCTTCGAACTCTCAGTTGTTGTTGGGGTACTTGATGGATTGCTAGATGATGTGGAAATTGATGATCTTGAAGGAGCTGAATGTTTCCCGGGTGCATGTGAAGAATATTTTTTTGATTTTGAATTTGCTGACAAATTTGAGGAGGTACTGGGTTCTGGTCCTTTTGAAGGTTCAGAAAGTCATTCGTCAGGATTAAGTAGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAGAAGTACCTATTGCACAATCTGAAAGCAAAAATGATTCTCTGGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGCAACAATCCTAGTCAACCATCACAAGGAAATTGCAGGTACAACATTTCACTTGATATACAGCATCTGCAAGAGTTGGATAACTGTCGTCATTTAGCTGGTGGTATACTGACTTGTAAGAAGGAAAAGGGTCCTGTCGAAAAAGGCCAACCTGCTGCACTTAGAGAGAAAAGGTTCCGGAAGCCTACGCAAAGGTATATCGAAGAATTTTCAAATGCGAGGTCAAAGGAAAAGGTACCACCTGCTGGTACAAAAACTAAACATTCGAGTAACTCATCATGTAATGTACTTCATATAAGAATTAAATCATTGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGAGGTGATGCTTCCTGAGTTGCAAGTTAGCAAAGGGCATCAGAAGAAAGAGAAACTTCAGTATGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACCACAAAAAGGTCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGTATATCTGAATATGGAGTTGGTCGTTGGACTGATATTAAGAAGTTCTTGTTTTCTTCTTCAAGCTACAGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGTGCAGAAAAACAAGAAAGAGGTTGAGCAAAATGACGAGTTAGCCCTACGTCCCTTACCATTTAATGTGGTACACCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTGCGTGTTAGCCAAGCTGGCCCCTCTGTCGTTGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1500 0.412 MDGRNQKRRRGRRYGKAKSKSKWERCYSTQHEMDREDYLRKCSNMKCQRVQVDESYVPALQDEVMEFEHLLAEPRNNLAPQDGSLDSHTTLNRKDDLELEVFVFELSVVVGVLDGLLDDVEIDDLEGAECFPGACEEYFFDFEFADKFEEVLGSGPFEGSESHSSGLSRSSIVGGVLESTEVPIAQSESKNDSLDETVTYESHGAFSNNPSQPSQGNCRYNISLDIQHLQELDNCRHLAGGILTCKKEKGPVEKGQPAALREKRFRKPTQRYIEEFSNARSKEKVPPAGTKTKHSSNSSCNVLHIRIKSLKRSPSEKSSNENSEVMLPELQVSKGHQKKEKLQYEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASSVQKNKKEVEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSKKLRVSQAGPSVVADSPPVSLSKRNVRRKFT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01232 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 366 426 IPR017930 -
Vimu3g01232 499 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 35 473 - -
Vimu3g01232 499 MobiDBLite consensus disorder prediction 333 348 - -
Vimu3g01232 499 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g01232 499 MobiDBLite consensus disorder prediction 311 371 - -
Vimu3g01232 499 MobiDBLite consensus disorder prediction 275 298 - -
Vimu3g01232 499 MobiDBLite consensus disorder prediction 464 487 - -
Vimu3g01232 499 ProSiteProfiles Myb-like domain profile. 367 422 IPR001005 -
Vimu3g01232 499 Pfam Myb-like DNA-binding domain 374 422 IPR001005 -
Vimu3g01232 499 CDD SANT_TRF 373 423 - -
Vimu3g01232 499 SUPERFAMILY Homeodomain-like 374 442 IPR009057 -
Vimu3g01232 499 SMART sant 371 424 IPR001005 -
Vimu3g01232 499 Gene3D - 360 473 - -
Vimu3g01232 499 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01232 Vimu-Chr3 21483814 21493099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01232 371 434 Single Myb Histone (SMH) Gene Family AT1G17520 38.806 2.37e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g01232 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01232 - - gmx:100810255 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01232 3 21483814 21493099 Vimu3g01232 3 21483814 21493099 ECH