Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01225 ATGCTTGTGAGAGTGAACACTCTTCTCCAAGGGTACTCTGGAATCAGATTCGAAATTTTGGAGGCCATCACCAAGCTTTTGAACAACAACGTCACTCCATGTTTGCCACTTAGGGGAACTATCACAGCATCTGGTGATCTTGTACCTTTGTCGTACATTGCCGGTTTGTTAACTGGCAGACCAAACTCGAAGGCTGTGGGTCCCTCTGGGGAGATTCTGAATGCTAAGGAAGCCTTTGACTTTGCCAACATTGGTTCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGGCTTGCCCTTGTGAATGGTACGGCTGTTGGCTCTGGCTTGGCCTCCATTGTTCTCTTTGAAGCAAACATTCTGGCTGTCTTGTCGGAAGTTATTTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAGCCCGAGTTCACTGATCATTTGACTCACAAGCTAAAGCACCATCCTGGCCAGATTGAGGCTGCAGCTATCATGGAACACATTTTGGATGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAGAAACCCAAACAAGACCGCTATGCCCTTAGGACTTCACCCCAATGGCTTGGTCCTCAAATCGAAGTGATCAGGTTTTCTACCAAGTCCATTGAGAGGGAGATAAACTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGTGGTAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGATAACACCCGTTTGGCTCTTGCTTCCATTGGCAAACTCATGTTTGCTCAATTTTCTGAGCTTGTCAATGACTATTACAATAATGGGTTGCCTTCAAATCTCACTGCCAGCAGAAACCCCAGTTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTACTGCTCCGAACTCCAATATTTGGCTAACCCTGTGACCAGCCATGTCCAAAGCGCGGAGCAACACAACCAAGATGTGAACTCTTTGGGATTGATTTCGTCTAGGAAGACCAATGAGGCTGTTGAGATCCTCAAGCTGATGTCTTCAACATTCCTCGTTGCACTTTGCCAGGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTGAAGAATGTTGTGAGCCAAGTTGCCAAGAGGACTCTCACTACAGGTGTCAATGGAGAACTTCATCCTTCAAGATTTTGTGAGAAAGACTTGTTGAAAGTTGTTGATAGAGAGTACACATATGCCTACATTGACGACCCCTGCAGTGGCACATACCCTTTGATGCAAAAACTAAGGCAAGTGCTTGTGGAATATGCATTGGCTAATGGAGAAAACGAGAAAAACTTGAACACGTCGATCTTCCAAAAGATTGCATCCTTTGAGGAGGAGTTGAAGGCCCTCTTGCCTAAGGAAGTGGAAGGTGCAAGACTTGCATATGAGAATGACCAATGTGCAGTTCCCAACAAGATCAAGGAATGCAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTAGGGACATCATTGCTGACTGGTGAAAAGGTCATCTCACCCGGTGAAGAGTGTGACAAGGTGTTCACTGCTATGTGCCAAGGGAAAATCATTGATCCTCTTTTGGAATGTCTTGGAGAGTGGAATGGTGCTCCTCTTCCAATTTCTTAG 1674 0.4522 MLVRVNTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFDFANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAVEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTYAYIDDPCSGTYPLMQKLRQVLVEYALANGENEKNLNTSIFQKIASFEEELKALLPKEVEGARLAYENDQCAVPNKIKECRSYPLYKFVREELGTSLLTGEKVISPGEECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01225 557 FunFam Phenylalanine ammonia-lyase 370 491 - -
Vimu3g01225 557 Gene3D - 1 103 IPR024083 -
Vimu3g01225 557 CDD PAL-HAL 1 367 IPR001106 -
Vimu3g01225 557 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 39 55 IPR022313 GO:0016841
Vimu3g01225 557 SUPERFAMILY L-aspartase-like 1 556 IPR008948 GO:0003824
Vimu3g01225 557 Gene3D - 370 491 IPR023144 -
Vimu3g01225 557 NCBIfam phenylalanine ammonia-lyase 1 546 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vimu3g01225 557 Pfam Aromatic amino acid lyase 1 384 IPR001106 -
Vimu3g01225 557 PANTHER HISTIDINE AMMONIA-LYASE 1 556 IPR001106 -
Vimu3g01225 557 Gene3D Fumarase/aspartase (Central domain) 104 552 - -
Vimu3g01225 557 FunFam Phenylalanine ammonia-lyase 104 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01225 Vimu-Chr3 21305930 21307603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01225 1 556 Monolignol Biosynthesis Gene Families AT2G37040 85.072 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01225 K10775 - gmx:100803857 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01225 3 21305930 21307603 Vimu6g02514 6 21878693 21881798 ECH
Vimu3g01225 3 21305930 21307603 Vimu3g02742 3 41728388 41733127 ECH
Vimu3g01225 3 21305930 21307603 Vimu3g01225 3 21305930 21307603 ECH