Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01224 ATGGACGCAACAATCCCCAATGGTAAAGACGCTTTCTGCGTCACTGCCGCCAATGCCGCGGGGGACCCGCTCAACTGGGCCGCCGCGGCCGACGCACTCTCGGGTAGCCATCTCGACGAGGTCAAGCGCATGGTCGCCGACTACCGCAAGCCCACCGTCCGCCTCGGCGGTGAGACGCTCACCGTCGCTCAGGTGGCGGCGATTGCGGCGCACGACCAGGGTCTTAAGGTGGAGCTGGCGGAGGCCGCCAGGGCCGGCGTCAAGGCCAGCAGTGACTGGGTCATGGACAGCATGGACAAGGGCACCGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACCTCCCACCGCCGTACCAAACAAGGTGGTGCCTTGCAGAAGGAGCTTATCAGGTCATTATCAACACTTTATCAACAAAATCTCTCTCTTTTCTCTCTGTATGCATTATTACGTTAG 456 0.6075 MDATIPNGKDAFCVTAANAAGDPLNWAAAADALSGSHLDEVKRMVADYRKPTVRLGGETLTVAQVAAIAAHDQGLKVELAEAARAGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRSLSTLYQQNLSLFSLYALLR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01224 151 SUPERFAMILY L-aspartase-like 22 137 IPR008948 GO:0003824
Vimu3g01224 151 Pfam Aromatic amino acid lyase 60 135 IPR001106 -
Vimu3g01224 151 Gene3D - 13 142 IPR024083 -
Vimu3g01224 151 PANTHER HISTIDINE AMMONIA-LYASE 20 135 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01224 Vimu-Chr3 21303625 21304080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01224 20 134 Monolignol Biosynthesis Gene Families AT3G10340 76.522 1.04e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01224 K10775 - gmx:100803857 208.379