Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01215 ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACAGCATCCTCTCTCTTCTCCCAAATGCTTCTCTTCTTCTCTCTCCCTCATCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAACCCACTTTCTCCCTCTCCTCCCGCTTCCTTCCCCGCGTCGCCCTCTCCTCCGACTACGACCAGCAAGAGGACACCTTTGCCACCGCCCAGGGCTTCTCCCCCGACCTTAAGCTCTTTGTTGGCAACCTTCCGTTTAGTGTCGACAGTGCGCAGCTCGCAGAGCTCTTCGAAAGCGTTGGGGTTGTGGAGGTGGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGGTTTGGGTTTGTGACAATGTCTTCGGTTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCCTTAGAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAAAGTTCATCTCGTCTTAGAAGTTCTAACAGAGGTGGTGGTGGAGGTGGTGGTGATTTTTCAGATAATAAAAACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCATGTAGCATTGGAGTCATTGTTTCGGGAACAAGGAAATGTCGTGGAAGCAAGGGTAGTCTATGACAGGGACAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAAGTCAGTAGTGCAATTGAGTCCTTGGATGGTGTGGTAAGCGTGCTAATCCTGAAGAGTGTGTGTGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATTCGAAGCCCAGG 846 0.5059 MSTSATSLALPTLTLRTQHPLSSPKCFSSSLSLIPNAKPISISTVFLKPTFSLSSRFLPRVALSSDYDQQEDTFATAQGFSPDLKLFVGNLPFSVDSAQLAELFESVGVVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGRALRVNAGPPPARNESSSRLRSSNRGGGGGGGDFSDNKNKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSRGFGFVTYSSADEVSSAIESLDGVVSVLILKSVCDLNGRAIRVSLADSKPR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01215 282 FunFam Ribonucleoprotein A, chloroplastic 63 185 - -
Vimu3g01215 282 SMART rrm1_1 85 158 IPR000504 GO:0003723
Vimu3g01215 282 SMART rrm1_1 192 268 IPR000504 GO:0003723
Vimu3g01215 282 SUPERFAMILY RNA-binding domain, RBD 181 281 IPR035979 GO:0003676
Vimu3g01215 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 279 IPR000504 GO:0003723
Vimu3g01215 282 PANTHER OS02G0815200 PROTEIN 28 279 - -
Vimu3g01215 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Vimu3g01215 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 254 IPR000504 GO:0003723
Vimu3g01215 282 SUPERFAMILY RNA-binding domain, RBD 79 189 IPR035979 GO:0003676
Vimu3g01215 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Vimu3g01215 282 Gene3D - 63 187 IPR012677 -
Vimu3g01215 282 Gene3D - 188 282 IPR012677 -
Vimu3g01215 282 MobiDBLite consensus disorder prediction 156 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01215 Vimu-Chr3 20906524 20908430 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01215 75 256 Eukaryotic Initiation Factors Gene Family AT4G34110 34.066 3.64e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01215 - - var:108324910 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01215 3 20906524 20908430 Vimu3g01215 3 20906524 20908430 ECH
Vimu6g02584 6 22448892 22450538 Vimu3g01215 3 20906524 20908430 PCT