Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01204 ATGGTCAGAACGGAATCAGACGGCGATGGAATCTCGATCTTCTCGTCGCGTGACATCTGGATCGATCACTGCACGCTATCGCGGTGCAAGGATGGCCTGATCGACGCGGTGATGGGTTCGACGGCAATAACGATCTCGAACAACCACTTCTCGCACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCAGCCAGACTCGGCGATGCAAGTGACGATCGCGTTCAACCACTTCGGAGAGAATCTGGTGCAGCGCATGCCGCGTTGCAGACTAGGTTACATTCACGTGGTGAACAATGACTTCACGCGATGGGAGATGTACGCGATCGGGGGAAGTGGGAGGCCTACGATTAACAGCCAGGGGAACCGCTACACTGCGCCGGAGGATCCATATGCGAAACAGATTACGAAGAGGCTGGACGCCGGAGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGATGTGATGCTGAACGGCGCGTTTTTCGTGGCCTCGGGAGGTGAGGCCGGCACTGACTACCAAAATGCGTACAGCGTTGAGCCTAAGAACGTGGATCGTATCTCGCTTCTCACCATGTCCGCTGGTGTTCTTGGCGTTGCCAGGTATGTTCTTGATTATGTCTATTTCTTGATTAATTTTTTTAATTATAACTAA 666 0.5375 MVRTESDGDGISIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYQPDSAMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGRPTINSQGNRYTAPEDPYAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGEAGTDYQNAYSVEPKNVDRISLLTMSAGVLGVARYVLDYVYFLINFFNYN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01204 221 PANTHER PECTATE LYASE 18-RELATED 3 203 IPR045032 GO:0030570
Vimu3g01204 221 Gene3D - 1 202 IPR012334 -
Vimu3g01204 221 SMART amb_all 2 132 IPR002022 -
Vimu3g01204 221 SUPERFAMILY Pectin lyase-like 6 203 IPR011050 -
Vimu3g01204 221 Pfam Pectate lyase 6 115 IPR002022 -
Vimu3g01204 221 PRINTS Pollen allergen Amb family signature 180 203 IPR018082 -
Vimu3g01204 221 PRINTS Pollen allergen Amb family signature 87 106 IPR018082 -
Vimu3g01204 221 PRINTS Pollen allergen Amb family signature 151 175 IPR018082 -
Vimu3g01204 221 PRINTS Pollen allergen Amb family signature 7 28 IPR018082 -
Vimu3g01204 221 PRINTS Pollen allergen Amb family signature 109 128 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01204 Vimu-Chr3 20510325 20511033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01204 3 204 Polysaccharide Lyase AT3G53190 76.733 1.68e-117 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01204 K01728 - gmx:100815062 391.349