Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01203 ATGAAAGTTTCTTTGAGGGTGAATGCTTCAATGGAAAGAAGGGAAATGCTTAGATTGTCAGAGAAAGATGCGACATCATGTCTTACAGGTAACCCCATTGATGATTGTTGGAAGTGTGACCCAGATTGGTCCAACAACAGACAGAGACTTGCTGATTGTGCAATTGGGTTTGGGCAGAATGCAAAGGGTGGAAAAGGTGGGGAATTTTACATAGTCACGGATTCATCTGATGAGGATCCTGTGAACCCAAAACCAGGAACACTTAGATATGCAGTGATACAGAATGAACCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAATAGCTACAAAACCATTGATGGACGTGGCGCTGATGTGCACATCGTGGGTGGAGGCTGCATCACTCTTCAGTATATTAGCAATGTCATTATTCACAACATTCACATCCACCATTGCCATCCCTCTGGTAACACATTCATCCTTCAATACTTTCTTCTTTTACTTACTTTTAACAGAAACTCTCAGTTTTATTCTATTAATTTTTAA 555 0.4072 MKVSLRVNASMERREMLRLSEKDATSCLTGNPIDDCWKCDPDWSNNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTFILQYFLLLLTFNRNSQFYSINF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01203 184 PANTHER PECTATE LYASE 18-RELATED 13 163 IPR045032 GO:0030570
Vimu3g01203 184 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Vimu3g01203 184 PRINTS Pollen allergen Amb family signature 77 102 IPR018082 -
Vimu3g01203 184 PRINTS Pollen allergen Amb family signature 53 70 IPR018082 -
Vimu3g01203 184 Gene3D - 30 165 IPR012334 -
Vimu3g01203 184 SUPERFAMILY Pectin lyase-like 24 158 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01203 Vimu-Chr3 20508198 20508803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01203 2 161 Polysaccharide Lyase AT3G53190 77.019 3.19e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01203 K01728 - gmx:100815062 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01203 3 20508198 20508803 Vimu3g01203 3 20508198 20508803 ECH
Vimu6g02466 6 21480745 21482969 Vimu3g01203 3 20508198 20508803 PCT