Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01196 ATGCACACACAACATAAACTACAACTGCTTTCCAAGGATCAGATGATCATCATCAAACCCAAACACAACAAGCGTCAAAGGGCACCCTCCCCTCCTACCTTTGCCAACCCTACTTCAACCTCCATTGATAGTGCCACAACCTCAACCACCACCATCCCATTTGAATCAATAGAAGAAGAACAAGACATGGTCAATTGTCTCATTCTCCTAGCTCAAGGCACACACCACGTGGCACCAGATCAAAACATCAACCACAGAAGGTCAACAAACCCTCGAGTCTTCCGGTGCAAGACTTGCAACAAATGCTTCCCTTCCTTCCAGTCACTTGGAGGACACAGAACCAGCCACAAGAAGCCCAAGCACTACACCACTGATGTAGAAGCACTTACTGCTACTTCCTTTAGAGACAATGATCTCACCACAACCACCACTCTCTCCTTGAAACCACCAACTAGGGTTAATAATTTTACCATCGCCACCAGAGTTCACCGCTGTTCGACCTGTTATGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGTCACATGAGGCGCCACAGAAATATTGTCAATGTTTCTTCAACAACGTCCACCAGTGCTGATGGTGGTGGTAGCCAAGAATACCATGGACCTAAGAAACCATTGAATTTGGACTTGAATATTCCGGCCACAGAGGAAGATCAAGGAGAGTCCACGTTTTCGTTTCTTCAACCAAAAAACGTTATCGTCTTCTCTTCTTCTTTGGTGAACTGCAATTACTGA 759 0.4598 MHTQHKLQLLSKDQMIIIKPKHNKRQRAPSPPTFANPTSTSIDSATTSTTTIPFESIEEEQDMVNCLILLAQGTHHVAPDQNINHRRSTNPRVFRCKTCNKCFPSFQSLGGHRTSHKKPKHYTTDVEALTATSFRDNDLTTTTTLSLKPPTRVNNFTIATRVHRCSTCYAEFSSGQALGGHMRRHRNIVNVSSTTSTSADGGGSQEYHGPKKPLNLDLNIPATEEDQGESTFSFLQPKNVIVFSSSLVNCNY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01196 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 185 IPR013087 -
Vimu3g01196 252 SMART c2h2final6 94 116 IPR013087 -
Vimu3g01196 252 SMART c2h2final6 163 185 IPR013087 -
Vimu3g01196 252 MobiDBLite consensus disorder prediction 29 48 - -
Vimu3g01196 252 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Vimu3g01196 252 PANTHER ZINC FINGER PROTEIN ZAT5 25 231 - -
Vimu3g01196 252 Pfam C2H2-type zinc finger 93 119 - -
Vimu3g01196 252 Pfam C2H2-type zinc finger 162 186 - -
Vimu3g01196 252 Gene3D Classic Zinc Finger 92 185 - -
Vimu3g01196 252 MobiDBLite consensus disorder prediction 193 212 - -
Vimu3g01196 252 SUPERFAMILY beta-beta-alpha zinc fingers 89 123 IPR036236 -
Vimu3g01196 252 MobiDBLite consensus disorder prediction 21 48 - -
Vimu3g01196 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Vimu3g01196 252 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01196 Vimu-Chr3 20424382 20425424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01196 15 252 C2H2 Transcription Factor Family AT5G03510 33.217 6.46e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g01196 zf-C2H2_6 4.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01196 - - var:108324571 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01196 3 20424382 20425424 Vimu6g02462 6 21431021 21431842 ECH
Vimu3g01196 3 20424382 20425424 Vimu3g01196 3 20424382 20425424 ECH
Vimu3g01196 3 20424382 20425424 Vimu4g00694 4 5365915 5366814 ECH
Vimu6g02462 6 21431021 21431842 Vimu3g01196 3 20424382 20425424 PCT