Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01195 ATGGCGGTTCCAGGCAGGCGCAACGGCATGAACGACGACGAAGAGGACTTAGACGATAACGCTCTCTTTGAGGAAGAAGGTTTCGTCGAGGACTACACCGATACCCCTCCTCATCTCCGCGACCTCTCCGCCGCCGCGCAGGTCGGCGACATCAATGCCCTCCGCCTCGCTCTAGGTTCTGTCGCCGTCACTCTCTATAACTTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACTGCTCTTCATTTGACATGTTTATATGGCCATTTGGCTTGCGTCCAGCTGCTACTAGAAAGAGGAGCAAACATTGAGGCTAAGGATGAAGATGGTGCAATTCCTCTGCATGATGCTTGTGCTGGAGGTAGATTTACTGAGATAGTCCAACTGCTACTAAACAGAGCAAATAGCGCAGAACATATAAAGAGAATGCTGGAATCAGTTGATTCTGAGGGTGATACTCCTCTTCATCACGCAGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGGGCATCGTCCACAAAGGAGAACTTATACGGAAAGACCCCGGCAGATTTACCTGATCAGAACACAGATGCTCGGAGTTTGCTTCACGCTGCCGTCCCTGCCATGGCATGTTAA 639 0.5008 MAVPGRRNGMNDDEEDLDDNALFEEEGFVEDYTDTPPHLRDLSAAAQVGDINALRLALGSVAVTLYNLTGSIDEPVEDGDTALHLTCLYGHLACVQLLLERGANIEAKDEDGAIPLHDACAGGRFTEIVQLLLNRANSAEHIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSNGASSTKENLYGKTPADLPDQNTDARSLLHAAVPAMAC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01195 212 FunFam BRCA1-associated RING domain protein 1 36 211 - -
Vimu3g01195 212 ProSiteProfiles Ankyrin repeat profile. 111 144 IPR002110 GO:0005515
Vimu3g01195 212 ProSiteProfiles Ankyrin repeat region circular profile. 152 178 - -
Vimu3g01195 212 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Vimu3g01195 212 Pfam Ankyrin repeats (3 copies) 44 135 IPR002110 GO:0005515
Vimu3g01195 212 Gene3D - 36 145 IPR036770 -
Vimu3g01195 212 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Vimu3g01195 212 Pfam Ankyrin repeat 153 178 IPR002110 GO:0005515
Vimu3g01195 212 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Vimu3g01195 212 SMART ANK_2a 78 107 IPR002110 GO:0005515
Vimu3g01195 212 SMART ANK_2a 152 181 IPR002110 GO:0005515
Vimu3g01195 212 SMART ANK_2a 111 141 IPR002110 GO:0005515
Vimu3g01195 212 SUPERFAMILY Ankyrin repeat 44 192 IPR036770 -
Vimu3g01195 212 Gene3D - 146 208 IPR036770 -
Vimu3g01195 212 PANTHER SOWAH (DROSOPHILA) HOMOLOG 35 209 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01195 71 208 Ion Channels AT2G25600 31.098 5.68e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01195 - - gmx:100527544 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01195 3 20384174 20386327 Vimu3g01195 3 20384174 20386327 ECH