Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01172 ATGGCCACTTTTGGCGCGCAAGGTGTTCGTCCTCCTCCATTGACATCCAGCTCCGATCAACCTCCTCTTTTTGATGGCACCACCAGGTTGTACACCAGTTATGGTTGCCCCTATGCACAACGTGTATGGATCACTAGGAACTACAAGGGGCTACAAGACAAGATCCATTTGGTCCCCATAAACCTTCAAGACAGGCCAGCTTGGTATAAGGAGAAAGTCTACCCTGAAAATAAGGTGCCATCATTGGAGCACAATGGCAAGGTTCTGGGAGAAAGTCTTGATTTGATCAAGTATGTAGATGTCAACTTTGAAGGGACACCTTTGTTTCCCACTGATCCTGCCAAGAAAGAGTTCGGTGAGCAATTGATATCCCATGTTGATACATTCACCAGAGACCTGTTCGTTTCATTGAAAGGAGATGCTGTACAAGAAGCCAGTAAGCGCGATATTCAAAATGCTCTTGGTAAATTTGATGATGGGCCATTCTTGCTTGGTCAGTTAAGTTTGGTGGATATAGCATATATTCCATTTGTTGAAAGATTTCAAATTGTCTTTGCTGAGTTGTTCAAACATGACATCACAGAAGGAAGGCCTAAAATTGCAATATGGCTTAAGGAGCTGAACAAGAGTGATGCTTATACAGAGACAAAAGTCGATCCACAGGAAGTCATTGATCTTTTCAAGGAACGTTTTCTGGCTTCCGCTAAGATTTAG 714 0.4314 MATFGAQGVRPPPLTSSSDQPPLFDGTTRLYTSYGCPYAQRVWITRNYKGLQDKIHLVPINLQDRPAWYKEKVYPENKVPSLEHNGKVLGESLDLIKYVDVNFEGTPLFPTDPAKKEFGEQLISHVDTFTRDLFVSLKGDAVQEASKRDIQNALGKFDDGPFLLGQLSLVDIAYIPFVERFQIVFAELFKHDITEGRPKIAIWLKELNKSDAYTETKVDPQEVIDLFKERFLASAKI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01172 237 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g01172 237 SFLD Main (cytGST) 29 209 - -
Vimu3g01172 237 FunFam Lambda class glutathione S-transferase 105 234 - -
Vimu3g01172 237 Gene3D Glutaredoxin 1 104 - -
Vimu3g01172 237 SUPERFAMILY GST C-terminal domain-like 103 231 IPR036282 -
Vimu3g01172 237 SFLD Glutathione Transferase (cytosolic) 29 209 IPR040079 -
Vimu3g01172 237 Pfam Glutathione S-transferase, C-terminal domain 150 205 - -
Vimu3g01172 237 SUPERFAMILY Thioredoxin-like 18 107 IPR036249 -
Vimu3g01172 237 PANTHER GLUTATHIONE S-TRANSFERASE L1 7 231 IPR044629 GO:0004364
Vimu3g01172 237 Gene3D - 105 235 - -
Vimu3g01172 237 Pfam Glutathione S-transferase, N-terminal domain 30 106 IPR004045 -
Vimu3g01172 237 CDD GST_C_Lambda 112 228 - -
Vimu3g01172 237 FunFam Glutathione S-transferase L2, chloroplastic 1 104 - -
Vimu3g01172 237 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 26 107 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01172 Vimu-Chr3 19787179 19789365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01172 10 232 Glutathione S-transferase Gene Family AT5G02790 65.778 8.42e-113 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01172 K00799 - gmx:547597 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02576 6 22384885 22393260 Vimu3g01172 3 19787179 19789365 PCT