Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01171 ATGGCAACTCTTAGCGTGCAAGCCGTTCGTCCTCCTCCATTAACATCCACCTCCGACCCACCTCCTCTTTTTGATGGCACCACCAGGTTGTACATCAGTTATTCTTGCCCCTATGCACAGCGTGTATGGATAACTAGGAACTACAAGAGACTACAAGACAAGATCAAATTGGTTCCTATTGATCTTCAAGATAGGCCAGCTTGGTATAAGGAGAAAGTCTACCCTGAAAATAAGGTGCCATCATTGGAGCACAATGGCAAGGTTTTGGGAGAAAGTCTTGATTTGATCAAATATGTAGATGCCAACTTTGAAGGGACAACTTTGTTTCCTGCTGATCCTGCTAAGAAAGAGTTTGGTGAACAACTATTATCCCATGTTGATACATTCAACAATGACGCGTCCTCTTCATTGAAAGGGGGTGTTGTACAGCAAGCTAGTTCTGCCTTTGAGTACTTGGAGAATGCTCTTGGTAAATTTGATGATGGGCCATTCTTTCTTGGTCAATTCAGTTTGGTGGATATTGCATACATTCCATTTGTTGAAAGATTCCAACCTGTATCTGTTGACGTGTTCAAACATGACATCACCGAAGGAAGGCCAAAACTTGCAACGTGGATTGAGGAGGTGAACAAGATTGATGCTTATACAGAGACAAAATTAGATCCCCAGGAAATCGTTGATAGATTCAAGAAACGTTATCTGGTATTACGAATCTCTTAA 720 0.4181 MATLSVQAVRPPPLTSTSDPPPLFDGTTRLYISYSCPYAQRVWITRNYKRLQDKIKLVPIDLQDRPAWYKEKVYPENKVPSLEHNGKVLGESLDLIKYVDANFEGTTLFPADPAKKEFGEQLLSHVDTFNNDASSSLKGGVVQQASSAFEYLENALGKFDDGPFFLGQFSLVDIAYIPFVERFQPVSVDVFKHDITEGRPKLATWIEEVNKIDAYTETKLDPQEIVDRFKKRYLVLRIS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01171 239 Gene3D Glutaredoxin 1 104 - -
Vimu3g01171 239 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 26 107 IPR004045 -
Vimu3g01171 239 Pfam Glutathione S-transferase, N-terminal domain 30 105 IPR004045 -
Vimu3g01171 239 SFLD Main (cytGST) 29 210 - -
Vimu3g01171 239 SUPERFAMILY Thioredoxin-like 20 105 IPR036249 -
Vimu3g01171 239 Pfam Glutathione S-transferase, C-terminal domain 141 207 - -
Vimu3g01171 239 Gene3D - 105 236 - -
Vimu3g01171 239 FunFam Glutathione S-transferase L2, chloroplastic 1 104 - -
Vimu3g01171 239 FunFam Lambda class glutathione S-transferase 105 236 - -
Vimu3g01171 239 MobiDBLite consensus disorder prediction 1 21 - -
Vimu3g01171 239 SUPERFAMILY GST C-terminal domain-like 103 232 IPR036282 -
Vimu3g01171 239 CDD GST_C_Lambda 112 230 - -
Vimu3g01171 239 PANTHER GLUTATHIONE S-TRANSFERASE L1 5 233 IPR044629 GO:0004364
Vimu3g01171 239 SFLD Glutathione Transferase (cytosolic) 29 210 IPR040079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01171 Vimu-Chr3 19692820 19694976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01171 10 234 Glutathione S-transferase Gene Family AT5G02790 68.000 4.86e-115 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01171 K00799 - gmx:100775492 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01171 3 19692820 19694976 Vimu3g01171 3 19692820 19694976 ECH