Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01166 ATGGGTTGGATTCCCTGTTCTGGAAGTTCAAACACTAAGAAGAAGCTAAAGAAGAAGTTAGAGAAGATGGAAGTGCAGAACAGTCTTGTTGATCCGATCAAAACCACCTCAGGTAGCGATGTTGTTGATTTTGTTGGAGTTGGATGTAAAATCAAGTCATCAATGGTTTGGGATAGCGAGACCCCTCTTACCAGATTGAGTCCTGGACGAGCCATCTTCTCAGGGAAGTTGAAGAGGAATTCATCCATGAATTCCAAAGATTCCACTAAAAATGGAAACCCGGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCTACTAGAAACTTCAGAGCTGAATGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTCTACAAGGGGCGTTTGGAAAATATTAATCAAATTGTTGCAATTAAACAACTTGACCGAAACGGACTACAAGGGAACAGAGAATTCCTTGTTGAAGTTTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGGGATCAAAGGCTTCTAGTTTATGAATTTATGTCATTAGGATCATTGGAAGACCACTTACATGATATTTCTCCTGGGAAGAAACAACTTGACTGGAACACGAGGATGAAAATAGCTGCTGGGGCTGCAAGGGGATTGGAATATTTACATGACAAAGCTAATCCTCCTGTCATATACCGTGATTTAAAATGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTCTGGCTAAACTTGGCCCTGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCACCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATGATTACTGGAAGGAAAGCAATTGACAATTCAAGATCTGCAGGAGAACAGAATCTTGTTGCATGGGCCAGACCCTTGTTCAAAGATCGAAGAAAATTCTCACAAATGGCTGATCCGATGCTCCAAGGTCAATACCCTTCAAGAGGGCTATACCAGGCCCTTGCTGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACTGCTTTGAGTTACCTTGCGTCACAAAAATATGATCCCAATACACAGACTGTACAAAGCTCTCGCCTTGCTCCTGGAACTCCTCCTAGAACCAAGAGGGGATAG 1239 0.4286 MGWIPCSGSSNTKKKLKKKLEKMEVQNSLVDPIKTTSGSDVVDFVGVGCKIKSSMVWDSETPLTRLSPGRAIFSGKLKRNSSMNSKDSTKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKQLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEMITGRKAIDNSRSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAEQANMRPVIADVVTALSYLASQKYDPNTQTVQSSRLAPGTPPRTKRG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01166 412 ProSiteProfiles Protein kinase domain profile. 114 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01166 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vimu3g01166 412 SMART serkin_6 114 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01166 412 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Vimu3g01166 412 CDD STKc_IRAK 120 381 - -
Vimu3g01166 412 Coils Coil 6 26 - -
Vimu3g01166 412 PANTHER OS07G0668900 PROTEIN 76 393 - -
Vimu3g01166 412 SUPERFAMILY Protein kinase-like (PK-like) 100 393 IPR011009 -
Vimu3g01166 412 Gene3D Phosphorylase Kinase; domain 1 98 190 - -
Vimu3g01166 412 FunFam Serine/threonine-protein kinase PBS1 191 399 - -
Vimu3g01166 412 Pfam Protein kinase domain 118 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01166 412 MobiDBLite consensus disorder prediction 392 412 - -
Vimu3g01166 412 FunFam Serine/threonine-protein kinase PBS1 86 190 - -
Vimu3g01166 412 Gene3D Transferase(Phosphotransferase) domain 1 191 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01166 Vimu-Chr3 19603619 19606536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01166 87 386 Glycoside Hydrolase AT3G07070 68.590 1.52e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu3g01166 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01166 - - gmx:100499648 701.049