Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01157 ATGGAAATGGGGGATAATTTTATTCATGGTAAAGTAGAAACACCAGGGAAAGGACCTGTTATTGAAGCAGCTAACGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTCATTTTAACTGAAGTGGCAATGCCTGGTTTATCAGGCATTGGTCTTCTGTACAAGATTATGGGCCACAAAACTCGGAAAAATATTCCAGTAGTTATGATGTCATCTCTTGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCCGTTGACTTTCTAGTCAAACCCATTCGGAAGAATGAGCTCAAAAACCTGTGGCAGCACGTTTGGAGAAGATGTCACAGTTCTAGTGGGAGTGGCAGTGAAAGTGGAACGCAAACACAGAAGTCTGTAAAATCAAAAAGTCTTGAGAAGTCTGATAATAATTCTGGGAGCAATGACGAAGATGATAATGGAAGTGTAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAG 516 0.407 MEMGDNFIHGKVETPGKGPVIEAANGLQAWKILEDLTNHIDLILTEVAMPGLSGIGLLYKIMGHKTRKNIPVVMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSDNNSGSNDEDDNGSVGLNNGDGSDNGSGTQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01157 172 Gene3D - 17 151 - -
Vimu3g01157 172 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 136 IPR045279 GO:0009736
Vimu3g01157 172 MobiDBLite consensus disorder prediction 149 172 - -
Vimu3g01157 172 Pfam Response regulator receiver domain 20 107 IPR001789 GO:0000160
Vimu3g01157 172 ProSiteProfiles Response regulatory domain profile. 1 113 IPR001789 GO:0000160
Vimu3g01157 172 MobiDBLite consensus disorder prediction 118 172 - -
Vimu3g01157 172 MobiDBLite consensus disorder prediction 118 135 - -
Vimu3g01157 172 SMART REC_2 3 109 IPR001789 GO:0000160
Vimu3g01157 172 SUPERFAMILY CheY-like 20 118 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01157 Vimu-Chr3 19229750 19231042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01157 20 172 Response Regulator Gene Family AT5G60100 68.790 6.34e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu3g01157 Response_reg 9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01157 K12129 - gmx:100806454 242.662