Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01152 ATGAACTCTAACACTTCGAATTCTCAGTCAATGGCGGTGGCGGCGAGTGATGGGTCGGGGAAGAAGGTGAGGAAGCCTTACACCATAACCAAGTCAAGGGAGAGTTGGACCGAGGAAGAGCACGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGGGATTGGAAAAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCTCATGTGCCTCCTCCCCGTCCTAAGCGAAAAGCTGCTCATCCTTACCCACAAAAAGCATCAAAAAATGGTTTGCTTCGATTTGAGATAGTGATCTTCTCTGTTCCTAAAGGCACAACATTAATGAAACTTTTCGGTTTTCTAGTTTTGGTGCCACTACCAGCTTCCATTGGTTATACTTCTTCAACAAACATGCTTGCACCTGGCTTTGCCACATGGGATGAAACCTCCTTGCTGATGAATACAGGACTCAGTAAATCCATGACCTGTCAGGATGAACCCAACAATATTCGTGGAAATGAAGGCATGCATACTTCGTATTCTGATATTGGATCAAAGGGGATAACAAAGATTACCAGCAGCAGTATTAGTGGTGTCAGAAATTCTCCTAGAACACTACAGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCGGTTCTTCATGGTTTGCCAGATTTTGCTGAAGTGTACAGTTTCATTGGAAGTGTATTTGATCCAGATACAAATGACCATGTCCAAAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTATTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGCATTGTCAGCATATGATGTGAATGGCATGGCAGTAGGAGTTGGTACAGGAATTGATGTGAAGAAGCAGACAAATGATCTATCATGTCAAACTGCTTAA 984 0.4157 MNSNTSNSQSMAVAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNGLLRFEIVIFSVPKGTTLMKLFGFLVLVPLPASIGYTSSTNMLAPGFATWDETSLLMNTGLSKSMTCQDEPNNIRGNEGMHTSYSDIGSKGITKITSSSISGVRNSPRTLQTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKALSAYDVNGMAVGVGTGIDVKKQTNDLSCQTA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01152 327 MobiDBLite consensus disorder prediction 1 15 - -
Vimu3g01152 327 PANTHER SWI/SNF COMPLEX-RELATED 7 286 - -
Vimu3g01152 327 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Vimu3g01152 327 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Vimu3g01152 327 SMART sant 32 80 IPR001005 -
Vimu3g01152 327 FunFam protein REVEILLE 6 isoform X1 35 83 - -
Vimu3g01152 327 ProSiteProfiles SANT domain profile. 31 84 IPR017884 -
Vimu3g01152 327 Gene3D - 36 83 - -
Vimu3g01152 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Vimu3g01152 327 CDD SANT 35 78 IPR001005 -
Vimu3g01152 327 Pfam Myb-like DNA-binding domain 33 78 IPR001005 -
Vimu3g01152 327 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g01152 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01152 Vimu-Chr3 19034633 19039710 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g01152 Myb_DNA-binding 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01152 - - vra:106754423 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01152 3 19034633 19039710 Vimu3g01152 3 19034633 19039710 ECH
Vimu6g02568 6 22335536 22338135 Vimu3g01152 3 19034633 19039710 PCT