Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01150 ATGGCCGCAGCTGCCCGTCCCCTTGTCACCGTCCAGTCCCTCGAGGGCGACATGGCCACCGACGCCTCCGCCACCGTTCCCATCCCCGACGTCATGAGGGCCTCCATCCGCCCTGACATCGTAAACTTCGTACACTCCAACATCTCCAAGAACAGCCGCCAGCCCTACGCCGTCAGCCGCCGGGCTGGCCACCAAACATCCGCCGAGTCCTGGGGAACGGGTCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGTGGAGGAACCCACCGTGCCGGCCAGGGAGCCTTCGGCAACATGTGCCGAGGTGGCCGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGCTACGCCGTTGTCTCTGCCATCTCTGCCTCCGCCATCCCTTCTCTCGTCCTTGCCCGCGGCCATCGCATCGAGACCGTCCCGGAACTCCCCCTCGTTATTAGCGACTCTGCTGAAGGAGTCGAGAAAACCAAGGAAGCAATCAAAGTCCTGAAACAGATTGGCGCCTTCCCTGACGCCGAGAAGGCGAAAGACAGCCACGGCATTCGTCCTGGAAAGGGAAAAATGCGCAACCGTCGCTACATATCCCGAAAGGGTCCACTAATCGTTTACGGAACAGAAGGAGCTAAAGCTGTTAAGGCTTTCCGTAACGTCCCTGGCGTTGAGGTGGCCAATGTTGAGAGGCTCAACCTTCTTAAGCTCGCTCCCGGTGGTCACCTTGGGCGTTTTGTGATTTGGACCAAGTCTGCTTTTGAGAAACTGGACTCCATATATGGATCCTTTGATAAGCCCAGTGAGAAGAAGAAGGGTTACCTGCTGCCAAGGTCCAAGATGGTGAACTCCGACCTCTCCAGGATTATTAATTCTGACGAGGTTCAGTCCGTTGTGAAGCCCATTAAGAAGGACGTGACTCGGGCCACGCTCAAGAAGAACCCTCTCAAGAATCTCAATGTCATGCTCAAGCTCAATCCCTATGCCAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAGGCCCAGCGTGTTAAGGCCAAGAAGGAGAAGCTCGATAAGAAGAGGAAGACTGTGTCCAAGGTATTTGGTGACAAATACATTTCCTTACTATTGTTCTTATATGATAGTCGATTGCGAATGCTGCGTTTTGTGGAGGAGGCTTCTACCATCAGAGCTGCAGGAAAGGCATGGTATCACACTATGGTGTCAGATTCGGATTATACAGAATTCGACAACTTTTCTAAGTGGTTGGGTGTGTCACAGTGA 1290 0.5473 MAAAARPLVTVQSLEGDMATDASATVPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAISASAIPSLVLARGHRIETVPELPLVISDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLSRIINSDEVQSVVKPIKKDVTRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKVFGDKYISLLLFLYDSRLRMLRFVEEASTIRAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01150 429 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Vimu3g01150 429 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Vimu3g01150 429 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vimu3g01150 429 FunFam 60S ribosomal protein L4 3 308 - -
Vimu3g01150 429 MobiDBLite consensus disorder prediction 54 96 - -
Vimu3g01150 429 PANTHER 60S RIBOSOMAL PROTEIN L4 4 422 IPR045240 -
Vimu3g01150 429 SUPERFAMILY Ribosomal protein L4 9 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vimu3g01150 429 Coils Coil 342 362 - -
Vimu3g01150 429 MobiDBLite consensus disorder prediction 54 73 - -
Vimu3g01150 429 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01150 Vimu-Chr3 18971333 18973344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01150 2 429 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 78.505 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01150 K02930 - gmx:100779764 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01150 3 18971333 18973344 Vimu3g01150 3 18971333 18973344 ECH
Vimu6g02567 6 22331892 22333413 Vimu3g01150 3 18971333 18973344 PCT