Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01146 ATGTTATGTTTAGCAGGTTTTGTGAGTCTGGACTGTGGTGGTAAAGAAAATTTCACTGACGAAATTGGTCTTCCATGGACTCCTGATGAACTTAGGTATGGAGACATAAGCACTATATCAGTTGCAAATGAGACACGGAAGCAATACACGACAGTACGACATTTTCCTGCTGATTCTAGAAAATACTGCTACACACTTGATGTTGTTAGTAGGACAAGGTACTTACTGAGGGCGTCGTTCTTGTACGGGAACTTTGATGCAAACAATGTTTATCCAAAATTTGACATTTTTGTTGGTGCTACTCATTGGTCGACTATAGTTATATCTGATGCTAACACCATAGAAATGAGAGAGCTCATATTTCTGGCTTTAAGTCCTACAGTTAGTGTATGTTTATCAAATGCAACAACTGGAAAGCCATTCATATCTACTCTTGAACTCCGGCAGTTCAATGGTTCAGTTTATTATACATACACCGAGGAACACTTTTACCTCAGTGTATCCGCAAGAATAAATTTTGGCGCAGATAGTGATGCTCCAATCAGGTATCCTGATGACCCATTTGATAGAATTTGGGAGTCAGATTCTATCAAGAGAGCAAACTATCTTGTCGATGTTGCTGCCGGAACTAGGAAAATTTCCACCAACAAATCAATTGAAGTTAGCAGTGATGAAATGCCACCAATGAAAGTAATGCAGAGTGGTGTAGTGGGCACAAACGGATCTCTAACTTACAGGTTGAACTTGGATGGTTTTCCTGGTTTTGCATGGGCAGTCACCTATTTCGCAGAGATTGAAGATTTGGCTGAAAACGAATCCAGGAAATTCAGACTAGTTCTTCCTGGTCATCCGGATATTAGTAAGCCTGTAGTAAATATTGAAGAAAATGCTCCAGGAAAATATCGCCTCTATGAACCAGGATATACCAATTTATCCTTACCCTTTGTTTTGTCCTTTAAATTTTCCAAAACATCTGATTCTGCCAGGGGCCCTCTTCTAAATGCCATGGAGATTAACGAGTATTTGGAGAAAAATGACGGCTCTCCTGATGGAGAAGTTATATCTAGTGTACTTTCACACTACTCCTCAGAAGAATGGGCACAAGAAGGAGGTGATCCTTGTCTACCTGTTCCATGGTCATGGTTGCTTTGTATTGGTGGTGATGGCAGTTTGTTGTCCAGTAAAAACTTGACAGGCAATATTCCTTTGGAGATAACCGAACTCACTGGTCTGGTTGAACTATGGCTTGATGGTAACATGTTGACTGGCCCAATACCAGATTTCACAGGATGCATGGACTTAAAGATCATTCATCTTGAGAACAATCAGTTGACAGGTGCGCTCCCAACATCTTTGGTGAACCTTCCAAACTTGAGGGAATTGTATGTCCAAAATAATATGTTATCCGGAACTGTACCATCTGATCTTCTGAAGAAAGTTTCTTTTCTAAACTACTCTGGAAACGATAATCTTCGTAAAGATAGCAGAAGAAAGACCCCCTTGTATGTGATTATTGGTTCAACAGTTGGAGCTGCTGTTCTGCTTTTGGCCACTGTTATATCATGCTTGTTTAAGCATAAAGGAAAAAACAGATATTACGAACAAAACAGCCTTGTTTCCCACCCTTCTCAAAGTCTGGAGCCTACTAAAAGCATTGGTCCTGCAGAAGCTGCACATTGCTACAGCTTTTCTGAAATCGAAAAATCTACAAATAATTTTGAGAAAAAAATTGGTTCTGGTGGTTTTGGAGTTGTTTACTATGGAAAACTGAAAGATGGAAAAGAGATAGCAGTTAAAGTTCTGACCAGTAATTCCTACCAGGGCAAACGAGAGTTCTCCAACGAGGTGATTCTTCTGTCAAGAATACATCATAGAAACTTGGTACAGCTTCTCGGCTATTGTCGAGAAGAAGGAAATAGCATGCTCATTTATGAGTTCATGCATAATGGAACTCTCAAGGAACATCTTTACGGTAATATCGATTGGAAGAAGCGCCTAGAGATTGCAGAAGACGCTGCAAAAGGGATTGAGTATCTCCACACAGGCTGTGTTCCTGCAGTCATCCACAGAGACTTAAAAAGCAGCAACATTCTTCTTGACCGACAAATGAAAGCCAAGGTTTCAGATTTTGGTCTTTCAAAACTTGCTGTGGATGGGGCATCCCATGTTTCTAGCATAGTACGAGGAACAGTAGGATATTTGGATCCTGAGTACTACATTTCTCAGCAGCTTACTGACAAGAGTGATATTTATAGTTTTGGCGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCTAATGACAGCTTTGGTGCTAATTGCAGAAACATAGTCCAATGGGCAAAACTACACATTGAGAGTGGAGACATACAAGGTATCATTGATCCCGTGCTGCAGAACAAGTATGACCTGCAATCAATGTGGAAAATAGCAGAGATAGCATTGATGTGTGTTCAACCACATGGACACATGCGACCATCAATTTCAGAAGTTCTGAAGGAGACACAAGATGCCATTGCTATTGAAAGAGGCTCCGAAGGAAATTCGGATGAGCCAAGAAATTCGGTTCATTCATCGGTCAACATGGATTTGGTTGCTCCTGAGAGCTTCCTCTCAATTGATGATTCCATTGCACAACCTACTGCACGATAG 2658 0.4056 MLCLAGFVSLDCGGKENFTDEIGLPWTPDELRYGDISTISVANETRKQYTTVRHFPADSRKYCYTLDVVSRTRYLLRASFLYGNFDANNVYPKFDIFVGATHWSTIVISDANTIEMRELIFLALSPTVSVCLSNATTGKPFISTLELRQFNGSVYYTYTEEHFYLSVSARINFGADSDAPIRYPDDPFDRIWESDSIKRANYLVDVAAGTRKISTNKSIEVSSDEMPPMKVMQSGVVGTNGSLTYRLNLDGFPGFAWAVTYFAEIEDLAENESRKFRLVLPGHPDISKPVVNIEENAPGKYRLYEPGYTNLSLPFVLSFKFSKTSDSARGPLLNAMEINEYLEKNDGSPDGEVISSVLSHYSSEEWAQEGGDPCLPVPWSWLLCIGGDGSLLSSKNLTGNIPLEITELTGLVELWLDGNMLTGPIPDFTGCMDLKIIHLENNQLTGALPTSLVNLPNLRELYVQNNMLSGTVPSDLLKKVSFLNYSGNDNLRKDSRRKTPLYVIIGSTVGAAVLLLATVISCLFKHKGKNRYYEQNSLVSHPSQSLEPTKSIGPAEAAHCYSFSEIEKSTNNFEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVILLSRIHHRNLVQLLGYCREEGNSMLIYEFMHNGTLKEHLYGNIDWKKRLEIAEDAAKGIEYLHTGCVPAVIHRDLKSSNILLDRQMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDSFGANCRNIVQWAKLHIESGDIQGIIDPVLQNKYDLQSMWKIAEIALMCVQPHGHMRPSISEVLKETQDAIAIERGSEGNSDEPRNSVHSSVNMDLVAPESFLSIDDSIAQPTAR 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01146 885 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 390 472 - -
Vimu3g01146 885 CDD STKc_IRAK 577 836 - -
Vimu3g01146 885 Gene3D Phosphorylase Kinase; domain 1 547 646 - -
Vimu3g01146 885 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 647 849 - -
Vimu3g01146 885 Pfam Protein tyrosine and serine/threonine kinase 573 834 IPR001245 GO:0004672|GO:0006468
Vimu3g01146 885 PANTHER OS07G0107800 PROTEIN-RELATED 434 840 - -
Vimu3g01146 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Vimu3g01146 885 SUPERFAMILY L domain-like 392 492 - -
Vimu3g01146 885 ProSiteProfiles Protein kinase domain profile. 571 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01146 885 Gene3D Ribonuclease Inhibitor 361 499 IPR032675 -
Vimu3g01146 885 SUPERFAMILY Protein kinase-like (PK-like) 554 835 IPR011009 -
Vimu3g01146 885 FunFam Leucine-rich repeat receptor-like protein kinase 549 646 - -
Vimu3g01146 885 Pfam Malectin-like domain 10 338 IPR024788 -
Vimu3g01146 885 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Vimu3g01146 885 Gene3D Transferase(Phosphotransferase) domain 1 647 860 - -
Vimu3g01146 885 SMART serkin_6 571 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01146 Vimu-Chr3 18694274 18699739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01146 6 675 Receptor kinase-like Gene Family AT2G37050 66.328 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu3g01146 Malectin_like 2.8e-74 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01146 - - gmx:100798007 1597.79