Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01145 ATGGCCGATGCTCCCGCGAGTCCAGGCGGCGGCGGTAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTACCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCCGCCAACGGCAAAATCGCCAAGGACGCCAAGGAAACCGTGCAGGAATGCGTTTCCGAGTTTATCAGCTTCATCACCAGCGAAGCTAGCGATAAGTGCCAGAGAGAGAAGAGAAAGACCATTAACGGCGACGATTTACTTTGGGCTATGGCCACTTTAGGTTTCGAGGAATATGTTGATCCGCTCAAGATTTACCTCGCCTCTTACAGAGAGGTAATTTTAGTTTACATTTATTTACTTGTGTTTACTTTTTTATTGAGCTTGCTTTTGAACCAGGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGAGTCATCTTCTAAGCGAGATGTTTATCCCAATCCTAATGTCCAGCTTGGTCATCAAGGTTCTTTCTCACAAGGTGTTAACTACACGAATTCTCAGGTGATTGATTATTCTCTCTTATGCAATGTATCCCCTTTTTTCCTGAGCTTGGGGCGTAGCATTGAAAAATGA 609 0.4828 MADAPASPGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLASYREVILVYIYLLVFTFLLSLLLNQGDSKGSAKGGESSSKRDVYPNPNVQLGHQGSFSQGVNYTNSQVIDYSLLCNVSPFFLSLGRSIEK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01145 202 SUPERFAMILY Histone-fold 28 117 IPR009072 GO:0046982
Vimu3g01145 202 Gene3D Histone, subunit A 18 154 IPR009072 GO:0046982
Vimu3g01145 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vimu3g01145 202 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vimu3g01145 202 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vimu3g01145 202 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vimu3g01145 202 FunFam Nuclear transcription factor Y subunit B-3 20 119 - -
Vimu3g01145 202 MobiDBLite consensus disorder prediction 1 25 - -
Vimu3g01145 202 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu3g01145 202 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01145 Vimu-Chr3 18632293 18633389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01145 1 186 CCAAT-HAP3 Transcription Factor Family AT2G37060 61.979 9.92e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu3g01145 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01145 K08065 - gmx:100791435 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01145 3 18632293 18633389 Vimu3g01145 3 18632293 18633389 ECH
Vimu2g02059 2 15289942 15292211 Vimu3g01145 3 18632293 18633389 ECH
Vimu1g01269 1 10078329 10080507 Vimu3g01145 3 18632293 18633389 ECH
Vimu6g02564 6 22266252 22271479 Vimu3g01145 3 18632293 18633389 PCT