Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01137 ATGGCCATGGCGCGACTCCACTTGCGGGAAATAACCATACGCATCTCCGAGTGTGACCTTGCCCATGACAGCAGTGGAACAAAGCTGAAATCCACAATGAAGACACGTGGAATGGGAGCTGCTCGCAAGCTCAAGTCCCATCGCAGGAGGCAAAGGTGGGCTGATAAGTCATACAAGAAATCTCATCTTGGGAATGAGTGGAAGAAACCTTTTGCTGGTTCTTCCCACGCAAAGGGAATTGTTCTTGAAAAGATAGGAATTGAGGCCAAGCAGCCAAACTCTGCTATTCGAAAGTGTGCCAGGGTTCAACTCATAAAAAATGGGAAGAAGATTGCTGCTTTTGTCCCAAATGATGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTTTTGATTGCTGGATTTGGACGGAAGGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTTGTGAAGGTTTCTGGTGTCTCTCTTTTGGCTCTTTTCAAGGAGAAGAAGGAGAAACCAAGGTCTTAA 522 0.4617 MAMARLHLREITIRISECDLAHDSSGTKLKSTMKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01137 173 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 28 173 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vimu3g01137 173 NCBIfam 30S ribosomal protein S12 37 172 IPR005680 GO:0003735|GO:0006412|GO:0015935
Vimu3g01137 173 MobiDBLite consensus disorder prediction 27 59 - -
Vimu3g01137 173 FunFam 40S ribosomal protein S23 56 173 - -
Vimu3g01137 173 Gene3D - 56 173 IPR012340 -
Vimu3g01137 173 CDD Ribosomal_S23 57 170 IPR005680 GO:0003735|GO:0006412|GO:0015935
Vimu3g01137 173 ProSitePatterns Ribosomal protein S12 signature. 90 97 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vimu3g01137 173 SUPERFAMILY Nucleic acid-binding proteins 51 171 IPR012340 -
Vimu3g01137 173 MobiDBLite consensus disorder prediction 40 56 - -
Vimu3g01137 173 Pfam Ribosomal protein S12/S23 62 172 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01137 Vimu-Chr3 18487557 18488998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01137 34 173 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.714 3.90e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01137 K02973 - rcu:8263368 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01137 3 18487557 18488998 Vimu3g01137 3 18487557 18488998 ECH
Vimu3g01137 3 18487557 18488998 Vimu6g02557 6 22238862 22240573 ECH