Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01127 ATGATTCAGCGAATGAGGATTTCAAATTACTCTTTCTATTTTTCACATGCCACTTGGATTCCTTTTAGGGATAAGGATTTGAATTGCTCCATAGTTCAGATCAGTATCCAGCATGTTCCTTATAGTGTTAGCAACTGCATTTTTCAGAAAACAAGCAGACCAAAGAAGAAATGGTTTGGAAAACAAAAGTTGCAGACTTCAGCTTCACAATCCGAAACTGATAAAGCACCTCCTCTTCCTCCACCTGAGGCTATTTTACCTCACTCTGAGATTGAAACCAGTCATGATGGCGTCAAAGTTGAAACTGCAGTTGTTGTTACCGAGGAACCTGTTCCTGCTGTTCAGACAAAACCTCTGGATGTCCAAGCCACTACAATTGTTCAGTTACACAGTCAACCAACAGAAGAAGTGGCAGCAATAAGGATTCAGAAAGCTTTTCGGGGATACTTGGCAAGAAGGGCACTGCGGGCTTTGAGGGGACTGGTGAGGTTGAGATCATTCATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACCCTCCGTTCTATGCAGACTTTTGCACATTTGCAAACTCAGATTCGTTATAGGAGGCTCAGGATGTTGGAGGAGAATCAAGCTCTACAGAAACAGCTCTTACAGAAACATGCAAAAGAGCTAGAGAGCATGAGGCTTGGGGAGGAATGGGATGACAGTGTACAATCGAAAGAACAGGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCAAAACTGGAAGAATTCATCAAGATCCATAAACCCAATGTTCATGGATCCAACCAATCCAACATGGGGTTGGAGTTGGTTGGAGCGATGGACAGCAGCCCGGCCCTGGGAGAGCCATAGCTTGGTGGAGAAAGAGAAGAATGACAATAAATCTATTAGAGGTTCTGGCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTAAGTTTCAGCTTAATTCTGAGAAACATTCTCCAACAGCGAGTCAAAATCCAGGCTCACCTAACTTTGAGTCACATTCCCAGCAATCGCATTCAAATCCTCCCAAGTCAGCTTCTCCAGCAGCTGCTAAGAAGCTGAAGAAAGTGAGTCCAAAGGACATCATGGCTATAGATGATGAGACCAAAAGTGTGATGAGCGTGCAGTCAGAGCGGGCAAGGAGGCACTCCATTGGTGGATCAACAGTGGGAGATGATGAAAGCCTTGCAAGCTCCCCAGCAATTCCAAGTTATATGGTGCCAACTAAATCTGCCAAAGCCAAGTCCAAAATGCAAAGTCCACTAGCTGCAGAAAATATGACCCCAGATAAAGGGTCCCCTGCTGGGACTGCAAAAAAACGTCTTAGTTTCCCTGCTTCACCTGCTAGACCAAGAAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTCAATGCTGAAATCGCTGTGGGAAATGGTGTGTCTGGCTGA 1503 0.4504 MIQRMRISNYSFYFSHATWIPFRDKDLNCSIVQISIQHVPYSVSNCIFQKTSRPKKKWFGKQKLQTSASQSETDKAPPLPPPEAILPHSEIETSHDGVKVETAVVVTEEPVPAVQTKPLDVQATTIVQLHSQPTEEVAAIRIQKAFRGYLARRALRALRGLVRLRSFMEGPVVKRQAISTLRSMQTFAHLQTQIRYRRLRMLEENQALQKQLLQKHAKELESMRLGEEWDDSVQSKEQVEAKLLSKYEAAMRRERAMAYSFSHQQNWKNSSRSINPMFMDPTNPTWGWSWLERWTAARPWESHSLVEKEKNDNKSIRGSGRGITSAEISKSFAKFQLNSEKHSPTASQNPGSPNFESHSQQSHSNPPKSASPAAAKKLKKVSPKDIMAIDDETKSVMSVQSERARRHSIGGSTVGDDESLASSPAIPSYMVPTKSAKAKSKMQSPLAAENMTPDKGSPAGTAKKRLSFPASPARPRRHSGPPKVESSFNAEIAVGNGVSG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01127 500 MobiDBLite consensus disorder prediction 337 500 - -
Vimu3g01127 500 PANTHER IQ-DOMAIN 5-RELATED 55 481 - -
Vimu3g01127 500 ProSiteProfiles IQ motif profile. 135 163 IPR000048 GO:0005515
Vimu3g01127 500 MobiDBLite consensus disorder prediction 337 369 - -
Vimu3g01127 500 MobiDBLite consensus disorder prediction 378 401 - -
Vimu3g01127 500 MobiDBLite consensus disorder prediction 58 91 - -
Vimu3g01127 500 Gene3D iswi atpase 132 159 - -
Vimu3g01127 500 SMART iq_5 134 156 IPR000048 GO:0005515
Vimu3g01127 500 Pfam IQ calmodulin-binding motif 138 156 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01127 Vimu-Chr3 18025962 18028967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01127 70 498 IQD Protein Family AT5G03040 52.500 6.66e-134 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01127 - - vun:114191598 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01127 3 18025962 18028967 Vimu3g01127 3 18025962 18028967 ECH
Vimu6g02554 6 22224337 22227452 Vimu3g01127 3 18025962 18028967 PCT