Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01118 ATGAGAGAGATGATTACATTCATGGACTCGAAAGAAAAATCGAAGGAGGCGGAGAGGTATTTGGATCCTCAGCTATGGCATGCGTGTGCAGGTGGCATGGTGCAGATGCCAGCAGTGAACAGCAAGGTCTATTACTTCCCTCAGGGCCATGCTGAACATGCATGCGGACCGGTTAACTTCAGGACCTGTCCCAAGGTTCGGCCTTTGGTTCCATGCAGAGTGGCTGCCATCAAGTACATGGCTGATCCTGACACCGATGAGGTGTATGCAAAACTCAGGCTTGCTCCTTTGAGCGTCAACGATGCTGATTGTGACCGAGATGTTGTTGGACCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGATTTTCTGTTCCGAGGTACTGTGCTGAGACAATTTTCCCGAGACTAGATTACTCGGCAGATCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCACGGGGAAACATGGAAATTCAGACACATCTACAGGGGCACGCCGAGGCGGCATCTGTTGACGACTGGATGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCAGGAGATTCGATTGTGTTTTTGAGGGCAGAAAACGGGGATCTCTGTGTCGGGATTCGGCGAGCGAAGAAGGGAATTGGCGGGGGACTTGAGGGCTCCTCTGGCTGGAACCCTTCGGGAGGAAGCTGTCCTATGCCCTATGGTGGATTTTCACCTTTTCTGAGGGAGGATGACAACAGAATCCTGAGAAATGGTAACAGCAATGGGTTGAACCCAAGTGTGAGTATGACGGGCAGGGGCAAGGTGAGACCAGAAGCTGTTGTTGAAGCTGCAAATCTCGCGGCCAATAAGCAACCATTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCTGAATTTTGTGTGAAGGCTCCACTGGTAGAAGCAGCACTGCAGATTAGGTGGTGCTCTGGTATAAGGTTCAAGATGGCCTTCGAAACTGAGGACTCCTCACGGATTAGTTGGTTCATGGGAACCATATCGTCAGTTCAGGTTGCCGATCCCCTTAACTGGCCTAACTCACCTTGGAGACTTCTCCAGGTGACATGGGATGAACCGGATTTACTTCAAAACGTGAGAAGGGTGAGTCCATGGCTGGTTGAGTTGGTGTCAAACATGCCTGCCATTCATCTTTCTCCATTCTCACCACCAAGGAAGAAATTGAGATTGCCTCAACACCCAGATTTCCCCCTTGAAGGGCAGATTCCTTTGCCGACATTTTCAGGAAATCTTCTTGGTCCCAGCAACACCAATCAGTTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGGTCACTATGGTCTTCCCATATCGGATCTCCACTTCAGCAAACTACATTCAGGTCTATTTCCTACTGGTTTCCCGCCTATTGATCACGCTGCTACGCCAATGAGAATCTCTAATAACCAGCCATTGCAAAAGCCCAGCATCAGTGAGAACGTCTCTTGCTTATTGTCTATGGCAAATTCTACTCCATCTTCAAAGAAAACGGACGAGGGGAAGACACCCCAGCTCGTGCTTTTCGGCCAGAGAATTCTCACCGAGCAGCAGATATCTCTCAGCAGCTCCGTTGACACATTCTCCCCAGTTCTTACCAAAAATTGTTGCTCTGATGGACATGCACACAAAGTGCCTAATATTTCTGATTGTTCTGGATCGGCTCTTCATCAGCAGCAAGGCCAACAGGAACAACGTTCCTCTTGTGAGAGGTTTCAATGGTACAAAGATAACCCCCAAGAAACTGAGGCCGGTCTGGAGACTGGTCATTGCAAAGTTTTCATGGAGTCAGAAGATGTAGGCAGGACTATGGACCTCTCGTTGCTTCGGTCCTATGATGAACTCTACAGAAGGCTGGCAGACATGTTTGGCATAGAAAAATCTGAGATGTTAAGTCAGGTGCTCTATCGCGATTCTAATGGAGCTGTCAAACACATTGGTGATGAACCATTGAGTGACTTCATAAAATCAGCCAGGAGGTTGACTATTCTAACGGATTCTGGCAGCAACAATGTAGGAGTGTAG 2115 0.487 MREMITFMDSKEKSKEAERYLDPQLWHACAGGMVQMPAVNSKVYYFPQGHAEHACGPVNFRTCPKVRPLVPCRVAAIKYMADPDTDEVYAKLRLAPLSVNDADCDRDVVGPETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGLEGSSGWNPSGGSCPMPYGGFSPFLREDDNRILRNGNSNGLNPSVSMTGRGKVRPEAVVEAANLAANKQPFEVVYYPRASTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQHPDFPLEGQIPLPTFSGNLLGPSNTNQFGCLPESTPAGMQGARHGHYGLPISDLHFSKLHSGLFPTGFPPIDHAATPMRISNNQPLQKPSISENVSCLLSMANSTPSSKKTDEGKTPQLVLFGQRILTEQQISLSSSVDTFSPVLTKNCCSDGHAHKVPNISDCSGSALHQQQGQQEQRSSCERFQWYKDNPQETEAGLETGHCKVFMESEDVGRTMDLSLLRSYDELYRRLADMFGIEKSEMLSQVLYRDSNGAVKHIGDEPLSDFIKSARRLTILTDSGSNNVGV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01118 704 Gene3D - 118 222 IPR015300 -
Vimu3g01118 704 Gene3D - 326 400 - -
Vimu3g01118 704 SMART B3_2 120 222 IPR003340 GO:0003677
Vimu3g01118 704 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Vimu3g01118 704 CDD B3_DNA 119 220 IPR003340 GO:0003677
Vimu3g01118 704 FunFam Auxin response factor 118 222 - -
Vimu3g01118 704 Gene3D - 616 702 - -
Vimu3g01118 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 697 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu3g01118 704 Pfam Auxin response factor 289 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu3g01118 704 ProSiteProfiles PB1 domain profile. 618 698 IPR000270 GO:0005515
Vimu3g01118 704 SUPERFAMILY DNA-binding pseudobarrel domain 113 221 IPR015300 -
Vimu3g01118 704 FunFam Auxin response factor 327 400 - -
Vimu3g01118 704 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01118 Vimu-Chr3 17176779 17179279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01118 17 704 B3 DNA Binding Superfamily AT4G30080 57.204 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu3g01118 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01118 - - gmx:100796522 1210.28