Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01110 ATGGAGTCATGTGTCCCACCCGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTATTGGTTACTATCTGAGGAAGAAGGTGGCATCTCAAAAGATTGACCTTGACGTTATCAGAGAGATTGATCTATATCGTATTGAACCATGGGATCTCCAAGATGCAGGATCGAGTATGAAGAGGAAAATGAGTGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTTATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAGGAGCCCCCAATCGACAAAAGTCTGATTGGATCATGCACGAGTATAGACTCGAATCCGACGAGAATGGAACTCCTCAG 336 0.4435 MESCVPPGFRFHPTDEELIGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDAGSSMKRKMSGRDKAVYDKAKLIGMRKTLVFYKGGAPNRQKSDWIMHEYRLESDENGTPQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01110 112 Gene3D NAC domain 14 57 IPR036093 GO:0003677|GO:0006355
Vimu3g01110 112 Gene3D NAC domain 58 112 IPR036093 GO:0003677|GO:0006355
Vimu3g01110 112 ProSiteProfiles NAC domain profile. 5 112 IPR003441 GO:0003677|GO:0006355
Vimu3g01110 112 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 53 - -
Vimu3g01110 112 SUPERFAMILY NAC domain 3 108 IPR036093 GO:0003677|GO:0006355
Vimu3g01110 112 Pfam No apical meristem (NAM) protein 60 103 IPR003441 GO:0003677|GO:0006355
Vimu3g01110 112 Pfam No apical meristem (NAM) protein 6 54 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01110 Vimu-Chr3 16400964 16401601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01110 1 112 NAC Transcription Factor Family AT2G18060 66.434 1.26e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu3g01110 NAM 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01110 - - pvu:PHAVU_002G110900g 193.741