LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g01109	ATGGACAACAAAGAAAAACACTTGTCATTGGTGGCCTATGATGAGATGAGTGGAAAACACAAGGTTGAGAAGGATGCCATAGGCAAGTCAGGTGATGGAAGAGAACTTTCCAGGGTCTTTTCTGAGGACTATGATTCAGCACAGATTTTGATATTAGATCCCAGGGGACCTACAATAAATACATGGAATAAAATTTTCTTAGCAGCATGTTTGCTTTCACTGTTTGTGGATCCCCTTTTCTTTTACTTACCAGTGGCTAAGAAAGAAAAGTGCATTGATATGTCAACTGCTCTTGAAGTGTTCCTCACCATAATCCGGTCTCTGATAGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACAGCTTATATTGCTCCTTCCTCTCGTGTATCTGGTAGAGGAGAGCTTATCATAGACTCTTCAAAAATTGCATCAAACTACATGCGAAAAGACTTCTGGCTTGATCTTGTGGCTGCTCAACCACTTCCACAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTGTCATCTGAAATCGTCAAGGCAAATGGGGTAATGATGGAAAAAGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTGTCAATTGAACGCCAGAATGAATGTTGGAAGAAAGCTTGTACACTGCAGTACCCACAGTGCCAGTATCATTATCTTGATTGCCAAAGCATGGCTGACCCAGATAGGATTGCTTGGTTAAGAACAAGCAATCTCTCAAGCCTGTGTGATCAGAACAGTGACTTCTTTCAATTTGGCATTTTTACTGATGCTCTAAATTTGGAAATTACAGCCTCAAAATTCTTCAACAAGTACTATTACTGTCTGTGGTGGGGACTAAGGAATCTAAGCTCTGTGGGACAAAATCTATTGACTGGCACACGAGTTGCAGAAATCAATTTTGCTGTGATCATTGCAGTTCTTGGATTGGTGCTTTTTGCATTACTCATTGGAAATATGCAGACATACTTGCAATCCACCACTACGCGGCTAGAAGAATGGAGAATAAGAAGAACAGATACGGAAAGATGGATGCGTCACAGGCAGCTCCCTCGTTACCTGAAGCAAAATGTAAGACGTCATGAACAATTCAGATGGGTTGCTACAAGAGGAGTTGATGAGGAAACTATTCTCAGGGACCTTCCCACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTCAATCTAGTTCGACAAGTACCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGGGCTTGTGTGGTTCGTGAAGGTGACCTTGTGAATGAGATGCTTTTCATTGTTAGAGGACGCCTAGATTCTTGCACCACCAATGGTGGCAGAACAGGTTTCTTCAACTCATGCAGACTTGGCTCTGGTGACTTCTGTGGTGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTCCAACGGTTGCCCTTCCTTCCTCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCTGGGGATTTGAAGTTTGTGGCAGCACAGTTCAGAAGGTTGCACAGCAAACAACTGAGGTATACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCTGCATGGTTCAGGTATAAGAGAATAAAGGAGACAAGTGAGCTCAAGAGAAAGGAGAATATGATGATGGCTTTTGTGCCTGGAACTTGCACTGAACATTTCTCCGCACCTCTTCAAGCTCCAATGGGCACTATGTATGCTGCAAAACTAGCATCCGGCCCAAGGAAAGGTAGAAGCCTGAGATACGGGCCTGAACTTGATATCCTTGGCTCACTGAGGAAGCCCCTTGAACCAGACTTCACTGATGATGACGGTGATGATGACAGTTAA	1977	0.4365	MDNKEKHLSLVAYDEMSGKHKVEKDAIGKSGDGRELSRVFSEDYDSAQILILDPRGPTINTWNKIFLAACLLSLFVDPLFFYLPVAKKEKCIDMSTALEVFLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASNYMRKDFWLDLVAAQPLPQYLLRLYLIYPLSSEIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPQCQYHYLDCQSMADPDRIAWLRTSNLSSLCDQNSDFFQFGIFTDALNLEITASKFFNKYYYCLWWGLRNLSSVGQNLLTGTRVAEINFAVIIAVLGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMRHRQLPRYLKQNVRRHEQFRWVATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVALPSSTRTVKAITEVEAFALIAGDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRIKETSELKRKENMMMAFVPGTCTEHFSAPLQAPMGTMYAAKLASGPRKGRSLRYGPELDILGSLRKPLEPDFTDDDGDDDS	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g01109	658	Gene3D	Jelly Rolls	423	543	IPR014710	-
	Vimu3g01109	658	ProSiteProfiles	cAMP/cGMP binding motif profile.	425	508	IPR000595	-
	Vimu3g01109	658	SMART	cnmp_10	425	556	IPR000595	-
	Vimu3g01109	658	SUPERFAMILY	cAMP-binding domain-like	354	547	IPR018490	-
	Vimu3g01109	658	Gene3D	-	67	349	-	-
	Vimu3g01109	658	Pfam	Ion transport protein	61	352	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Vimu3g01109	658	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	36	618	-	-
	Vimu3g01109	658	SUPERFAMILY	Voltage-gated potassium channels	53	347	-	-
	Vimu3g01109	658	Gene3D	Helix hairpin bin	351	416	-	-
	Vimu3g01109	658	PRINTS	EAG/ELK/ERG potassium channel family signature	117	126	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Vimu3g01109	658	PRINTS	EAG/ELK/ERG potassium channel family signature	338	347	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Vimu3g01109	658	PRINTS	EAG/ELK/ERG potassium channel family signature	388	395	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Vimu3g01109	658	PRINTS	EAG/ELK/ERG potassium channel family signature	294	311	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Vimu3g01109	658	PRINTS	EAG/ELK/ERG potassium channel family signature	320	331	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Vimu3g01109	658	PRINTS	EAG/ELK/ERG potassium channel family signature	205	215	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Vimu3g01109	658	CDD	CAP_ED	425	556	IPR000595	-
	Vimu3g01109	658	FunFam	Cyclic nucleotide-gated ion channel 1	423	541	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g01109	Vimu-Chr3	16394450	16399240	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g01109	28	652	Ion Channels	AT2G28260	61.774	0.0	816

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g01109	K05391		-	gmx:100804375	1184.47