Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01096 ATGTTGGTTGACATCAAAGCATCAAACATCTTAGTCAATGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTATCTGATGATCCTACAACAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGTTACATGGATCCTGAGTATCTAAGAACATATCAACTCACTGAAAAAAGTTATGTTTATTCCTTTGGTGTTTTGCTTGTAGAAATGGTGACAGGAAGGCATCCAATTGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGTAAGTGTATCAGTTCTTCAAAATTTCAACTTAAAGAGTAAATTATCACATTGCTTTGGAGTAAGCAGTACCTGTTTAAACTACTTATGA 375 0.3627 MLVDIKASNILVNENLKAKVADFGFARLSDDPTTTHISTQVKGTAGYMDPEYLRTYQLTEKSYVYSFGVLLVEMVTGRHPIEPKRPLDERVTIRWVSVSVLQNFNLKSKLSHCFGVSSTCLNYL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01096 124 ProSiteProfiles Protein kinase domain profile. 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01096 124 SUPERFAMILY Protein kinase-like (PK-like) 4 99 IPR011009 -
Vimu3g01096 124 Pfam Protein kinase domain 3 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01096 124 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 4 86 - -
Vimu3g01096 124 Gene3D Transferase(Phosphotransferase) domain 1 2 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01096 Vimu-Chr3 15501945 15502319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01096 4 82 Receptor kinase-like Gene Family AT5G49760 67.089 7.91e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vimu3g01096 Pkinase 1.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01096 - - gmx:100811511 177.178