Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01082 ATGGAAGCAGCACTCAGCAACACCACCATTTCTGCAGGGTCAGCTCCACCACCATCTGGGGTGTCTCAGCCAATGAACATGAATGTTAACATGAACATGAACGTGGGAAACGGCGAAGGAACAACAACACCAGCATCTGCGCCAGCACCAGCCTCGACACCAACGACGATGGTTCCTGCTGTGCCAGCTGCAACGACGACAACAACATTGGTAACAACAACGCCAGGGAGCACTGGGAGTCAAGGGAGTTTTGACTTGTTTGGGAAGAAGAAGAGAGGGAGGCCGAGAAAGTATGATGCAGATGGGAACCTGAGGGTGAGTGCAACCCCGACACCACCTCCACCGGGTTTCACTTTGTCCACACCTTCTGAGTTCTCTAACAAAAGGAGCCGTGGCAAACACACAGCTTTTGGCAACTACCAACTCTTTTCTTCTTTTGGTGTTGTGATGTTGCTGCTGCTGAGTGCTGACCTCACTCATTGTACTATGTCGTCCCCGATTTTGGAGATGGAAATTATTATACCACATACGGCTAATGTGTGGATTGGTTTTCTGTCCGTGATTCTTGAAGGTGAGGTATTTGCAAACACAGCTGCTGGTGATTTCATACCGCATGTGGTGACTGTTTACACTGGAGAGGTAATGCAGAAGCCTGTGTACGTTGTTGTCTTTTTGCAGATTTATGTAATGATGTATCATTTGGCTCTAGTTTTCTTGAGCAATTTTGACAGATCTTTTTGGTTTGGCGATTTGGATAATGATCTTGTTACTTTTCTACTTTGCAGGATGTTGCTGGAAAGATCTTGTCATTTGCTCAGAAGGGTCCAAGAGGAATCTGTATTCTCTCTGCCAATGGAGCTATCTCAAATGTCACCATACGCCAACCCGGCTCTTCTGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATTCACTGTTGCTGACAACAGTGGCATGAAAAGTCGAACTGGTGGATTAAGTGTCTCACTTGCTGGCCCTGATGGTCGAGTGATAGGAGGTGGTGTTGCTGGACTTTTAACAGCTGCTGGTCCCATCCAAATTGTAGTAGGAAGCTTCACGCAAAATGCACAGAAGAGCCAAAAGAAGAAGTATCAACGTGAACAACAGCCAGTGGTGTCCCCTACTTCAGCTGTTCCAGAAACTGTGACATTTGCTAGACCTATCTCACAAGCAAATGCTGAAGGTGAAAACTTTTTGATGCCCATGTCTCAGATACCAGATCAAACCCAGAGAGAATCTGTCAGTGTTTCAAGTGACAAACAGAACCTAGATGCTACACTTGATGCTGCTAATTGGAATGGTTCTGAGGAATATTCAGACCAGAGGACATCCCCAGACATCAACATATCTTTGCCGGATGAATAG 1386 0.4603 MEAALSNTTISAGSAPPPSGVSQPMNMNVNMNMNVGNGEGTTTPASAPAPASTPTTMVPAVPAATTTTTLVTTTPGSTGSQGSFDLFGKKKRGRPRKYDADGNLRVSATPTPPPPGFTLSTPSEFSNKRSRGKHTAFGNYQLFSSFGVVMLLLLSADLTHCTMSSPILEMEIIIPHTANVWIGFLSVILEGEVFANTAAGDFIPHVVTVYTGEVMQKPVYVVVFLQIYVMMYHLALVFLSNFDRSFWFGDLDNDLVTFLLCRMLLERSCHLLRRVQEESVFSLPMELSQMSPYANPALLGRFEILSLSGSFTVADNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFTQNAQKSQKKKYQREQQPVVSPTSAVPETVTFARPISQANAEGENFLMPMSQIPDQTQRESVSVSSDKQNLDATLDAANWNGSEEYSDQRTSPDINISLPDE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01082 461 SUPERFAMILY AF0104/ALDC/Ptd012-like 298 365 - -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 1 27 - -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 409 461 - -
Vimu3g01082 461 ProSiteProfiles PPC domain profile profile. 228 382 IPR005175 -
Vimu3g01082 461 Pfam Plants and Prokaryotes Conserved (PCC) domain 297 360 IPR005175 -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 70 84 - -
Vimu3g01082 461 CDD DUF296 292 359 IPR005175 -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 70 120 - -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 35 54 - -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 409 455 - -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 87 101 - -
Vimu3g01082 461 MobiDBLite consensus disorder prediction 366 385 - -
Vimu3g01082 461 Gene3D - 233 377 - -
Vimu3g01082 461 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 216 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01082 Vimu-Chr3 15260758 15264437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01082 89 429 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 30.769 1.88e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01082 - - gmx:100779227 275.404