Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01072 ATGGAAATGCCTGCTAGAAGATCCAACTACTCGCTCCTCAGCCAAATTCCTGACGACCAGTTCTCCGGCGCCTCCGCACCGTCCTCCTCCGGCGACGGAAAGACAGGCCGCGCCGGAAAGTCGGACCGCGTCTTCGACTGGGACCTCGTCTCCGATCACAGGGCGGCTCAGCAGGGGGCCAACCGGATCGGAAACCTGTACTCCTCGATCGGCCTGCAGAGGCAGTCCAGCGGGAGCAGCTACGGCGAGAGCTCGCTATCCGGCGGCGGCGACTTCTATGCTCCGACGCTTTCCACGGCGGCGGCCAGTGACGCTGACGCCTTTGGCTACCTCCACGACGATAGGAGCAAGTTTTCTGAGGCCCCGGCGAGGATCGCGGGCTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAAAGCTACCAGCTGCAGCTCGCGCTCGCGCTGCGTCTCTCGTCGGACGCCACGTGCGCGGATGATCCCAATTTCCTCGATCCGATGCCTGACGATGGGGCCTTGCGGCTCTCGTCATCGGCGGACGCGGTCTCGCATAGGTTTTGGGTGAATGGCTGCCTGTCATATTCTGACAAAATTCCAGATGGCTTTTACTTAATTCACGGGATGGATTCTTTTATCTGGACTGTATGCACTGATCTGCATGAAAATGGCCGGATTCCTTCAGTTGATATGCTGAAGTCTGTGAATCCCTGCATCGTTTCTTCACTTGAAGTAGTTTTGGTAGATCAACGCAGTGACCCCAGCTTAAGAGATTTGCAAAATAGAGCTCATAACATTTCTTGTAGCAGCATAACAACATCAGATGTTGTAGATCAGCTCTCCAAGCTGGTTTGCAACCGTATGGGGGGATCAGTGTCTGTTGGGGAAGATAACCTTGTTTCCATCTGGAGGGATTGCAGTAATGATCTTAAAGATTGTTTGGGATCTGTTGTTATTCCTATAGGTAGTCTATCTGTTGGCCTCTGCAGGCATCGTGCTATATTATTCAAAGTACTAGCTGATGCCATCGATCTGCCATGCCGAATTGCAAAGGGCTGTAAATATTGCAAAAGGGATGATGCCTCATCTTGTCTTGTACGATTTGGGCTGGACAGGGAATATCTTGTTGATTTAATTGGAAAGCCAGGACACTTATCTGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCACGACTTAAACCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTCGGACTGTCTGTCTCTTGAGCTCGTCTTTGACAACAGTTCAGCAGGTTATATTCATATTTACTTTTATTTTATGATATTCTGTATCTGCGAATGCTTTGTTGTGTTTTCACTTCTTGAAATATCCTTGTGCCAGTATAGAATACCCTATATTCTTTTTATAGGAGTTGTTGCCAATGGAAGTTCTCGATTCTCTATTTCAGAGCAGTTTGATGGGAAGTACAAAGACAGGAATAACCCGAGGCCAATTTCAACAGACAGCAATAGAAGTTCCCACCTTCCTCTCCATCCCCAAGATTCTCATCCCAGCACACGTGACCAGTTTTCTGAAACATATGTACCAGGTAATGCTCCTCAGAACATTGTAGACTCAACCGTGGGAAAGTATCCACCACCAGTAAAGCATAAGCGTCCTGTTGGTATGCCAACCCCCTTAGCACTTACAAATACTAATGACGACATGATTGAGGGCAAGAGGTTTGTTGAAGGAAGTCAACTAATTCCTAGCAAACCTACTCGAGAGCTTACACTTGACATGGAGGATTTGGACATCCCATGGAGTGATCTTGTTTTAAGAGAGAAAATTGGGTCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTCCAGGAGTTCCTGAGGGAGGTTACAATAATGAAACGTTTGCGGCATCCAAACATTGTTTTGTTTATGGGAGCAGTCACTCAGCCCCCTAACTTATCAATTGTCACGGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAGATCTGGTGCCAAAGAGGTGTTGGATGAGAGGCGTAGGCTTAGTATGGCTTATGATGTGGCAAAGGGGATGAATTATCTTCATAAACGAAACCCCCCCATCGTTCATAGAGATCTGAAATCTCCAAACCTTCTCGTTGACAAGAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGTCTGAAGGCCAATACATTTCTCTCATCCAAGTCTGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAGGTTCTTCGTGATGAGCCATCAAATGAGAAGTCAGATATTTACAGCTTTGGTGTAATCTTATGGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGGTTGTGGCAGCTGTTGGTTTTAAGGGAAAAAGGCTTGAGATCCCACGTGATGTGAATCCCCAAGTAGCTGCTCTAATCGAGGCTTGCTGGGCCAACGAGCCTTGGAAACGACCTTCTTTTGCGAGTATTATGGATTCTTTAAGACCATTGCTGAAACCTCCTACACCTCAACCTGGTCGTCCGAACATGTCATTACTCAGCTGA 2667 0.4777 MEMPARRSNYSLLSQIPDDQFSGASAPSSSGDGKTGRAGKSDRVFDWDLVSDHRAAQQGANRIGNLYSSIGLQRQSSGSSYGESSLSGGGDFYAPTLSTAAASDADAFGYLHDDRSKFSEAPARIAGSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPMPDDGALRLSSSADAVSHRFWVNGCLSYSDKIPDGFYLIHGMDSFIWTVCTDLHENGRIPSVDMLKSVNPCIVSSLEVVLVDQRSDPSLRDLQNRAHNISCSSITTSDVVDQLSKLVCNRMGGSVSVGEDNLVSIWRDCSNDLKDCLGSVVIPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDASSCLVRFGLDREYLVDLIGKPGHLSEPDSLLNGPSSISFSSPLRFPRLKPAEPTIDFRSLAKQYFSDCLSLELVFDNSSAGYIHIYFYFMIFCICECFVVFSLLEISLCQYRIPYILFIGVVANGSSRFSISEQFDGKYKDRNNPRPISTDSNRSSHLPLHPQDSHPSTRDQFSETYVPGNAPQNIVDSTVGKYPPPVKHKRPVGMPTPLALTNTNDDMIEGKRFVEGSQLIPSKPTRELTLDMEDLDIPWSDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFQEFLREVTIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDIYSFGVILWELATLQQPWVNLNPAQVVAAVGFKGKRLEIPRDVNPQVAALIEACWANEPWKRPSFASIMDSLRPLLKPPTPQPGRPNMSLLS 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01072 888 SUPERFAMILY Protein kinase-like (PK-like) 592 867 IPR011009 -
Vimu3g01072 888 SMART serkin_6 614 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01072 888 MobiDBLite consensus disorder prediction 498 575 - -
Vimu3g01072 888 Gene3D Transferase(Phosphotransferase) domain 1 693 877 - -
Vimu3g01072 888 MobiDBLite consensus disorder prediction 8 35 - -
Vimu3g01072 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Vimu3g01072 888 MobiDBLite consensus disorder prediction 1 39 - -
Vimu3g01072 888 Gene3D Phosphorylase Kinase; domain 1 607 692 - -
Vimu3g01072 888 Pfam Protein tyrosine and serine/threonine kinase 615 868 IPR001245 GO:0004672|GO:0006468
Vimu3g01072 888 FunFam Serine/threonine-protein kinase isoform 1 604 692 - -
Vimu3g01072 888 CDD STKc_MAP3K-like 620 868 - -
Vimu3g01072 888 PRINTS Tyrosine kinase catalytic domain signature 839 861 IPR001245 GO:0004672|GO:0006468
Vimu3g01072 888 PRINTS Tyrosine kinase catalytic domain signature 688 701 IPR001245 GO:0004672|GO:0006468
Vimu3g01072 888 PRINTS Tyrosine kinase catalytic domain signature 776 786 IPR001245 GO:0004672|GO:0006468
Vimu3g01072 888 PRINTS Tyrosine kinase catalytic domain signature 729 747 IPR001245 GO:0004672|GO:0006468
Vimu3g01072 888 PRINTS Tyrosine kinase catalytic domain signature 795 817 IPR001245 GO:0004672|GO:0006468
Vimu3g01072 888 ProSiteProfiles Protein kinase domain profile. 614 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01072 888 Pfam Ethylene-responsive protein kinase Le-CTR1 179 384 - -
Vimu3g01072 888 FunFam Serine/threonine-protein kinase CTR1 693 878 - -
Vimu3g01072 888 ProSitePatterns Protein kinases ATP-binding region signature. 620 641 IPR017441 GO:0005524
Vimu3g01072 888 MobiDBLite consensus disorder prediction 508 548 - -
Vimu3g01072 888 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 136 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01072 Vimu-Chr3 14881853 14892382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01072 589 884 MAP Kinase Kinase Kinase AT5G03730 85.473 2.17e-177 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu3g01072 PK_Tyr_Ser-Thr 3.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01072 K14510 - gmx:100800648 1452.57