Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01071 ATGAACCCTACCGATGACAACTCTCCCAAGCCCTTGGAGGTTCTGCAGATGAACCCGGTTCCGCCCTTTTTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCCATCATCTCCTGGGCCTCCTCCGGTTTTAGCTTCGTCGTCTGGGATCCTCTGGAGTTCGCCAGAGTCGTCTTGCCGCGACATTTCAAGCACAACAACTTCTCCAGTTTCGTTCGCCAGCTTAATACTTATGTGGGTATCTTCGTTCCGCTACACATGGCTTCTTCCCTTTTATCTCTTTGTAACTCTTCTTTTGCTTTTGGCTTGTGGGTCCTTATGAGAAATATTCTCCCTCCTCTAGAAGGGATTTCATCTTCCACAGGTAGTTCTCAAGGTTCTTTGGGGCATGGATTCCGAAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCACCACAATCCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTCCTACCACTGAGGCAGGGAGGTCCGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATCTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACTGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTGCAATCTGCAGAACAAAGGCAGAAAAAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTAAGGCAAAAGAAAGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGCAGAAACTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGAAAAATATAGGCATGTCTTCTGAATCTCCAAAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCGGGAGAAATGAGTGGAGGTGCACAAGATCTCACTGTTCAAATTCAGAATACTGTAACAGATGATTTGGCTTTAGTGCACAGGATCACATCACCTCAAGGAACGATGATTGGAGAAGGATCATCTGAAGACCTCCTTTTCAAAGGGAAGAGTGTTATGAGCCCTAGTCTAGAACTTCCTCCGGATTATTTTACTTCCTTCCCAGAGGTTTTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAGCTGAAGACATTATCAAGCTTGAAGATATATGGGATTCTGGCCTCAATCTTAGTGGTGCTGGTTCAAGCTGTGGGAATGAGCTGTGGGGAAATCCTATGAATTATGAACATGTTCAAGAGTTTGGAATAACAAGTGACATGTCTGAGTCAGACATCTGGGATATTGGCTCTGGAAGTTTGGGAATTGATAAGTGGCCAGGCTATGAACCTTCTGTTGGTGAACTAGATGGTCAATCTGGTCACCCAAAAGAAGATAGGCCTCAGAATCTTGATCCATAG 1515 0.4528 MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYVGIFVPLHMASSLLSLCNSSFAFGLWVLMRNILPPLEGISSSTGSSQGSLGHGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSPQSQQVGSYIGIGSPTTEAGRSEVEVEIEKLRKERTILMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKKMVSFLAKLIQNPAFLARLRQKKEQREIDSPRVVRKFVKQHQHETGTAETLQEGQIVRYQPDWKNIGMSSESPKLSPVSIEQSPHYLSQGLAGEMSGGAQDLTVQIQNTVTDDLALVHRITSPQGTMIGEGSSEDLLFKGKSVMSPSLELPPDYFTSFPEVLTQEKGFQDFSALGAEDIIKLEDIWDSGLNLSGAGSSCGNELWGNPMNYEHVQEFGITSDMSESDIWDIGSGSLGIDKWPGYEPSVGELDGQSGHPKEDRPQNLDP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01071 504 Coils Coil 187 214 - -
Vimu3g01071 504 MobiDBLite consensus disorder prediction 490 504 - -
Vimu3g01071 504 Gene3D - 15 165 IPR036388 -
Vimu3g01071 504 Pfam HSF-type DNA-binding 23 164 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01071 504 MobiDBLite consensus disorder prediction 476 504 - -
Vimu3g01071 504 SMART hsfneu3 19 164 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01071 504 FunFam Heat stress transcription factor B-4 15 115 - -
Vimu3g01071 504 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01071 504 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01071 504 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g01071 504 SUPERFAMILY "Winged helix" DNA-binding domain 19 87 IPR036390 -
Vimu3g01071 504 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 292 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01071 Vimu-Chr3 14870917 14873680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01071 9 467 HSF AT5G03720 39.957 4.60e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu3g01071 HSF_DNA-bind 1.8e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01071 K09419 - gmx:100780835 717.227