Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01069 ATGGAGAACTCGCGTAGACTGTTCGATAGATCGCGAGAGCCTGGACCGAAGAAGCCCCGATTGATGGAAGAGCTGGATCCAGCTCCGAATTCTGGTGCGAGACAGTTTCCTCAGCTACAAGGGATTTCTGGGAATTCGACGTTACTGTCTGCAAGGTTTAGAACTAACGAAAGAGATGTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTAGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTTCGGAGAAGGCCATTGCAGCTACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAACTGGGCTTCACTTCTGCAGTCAATGGCTCATCTGCTTCGTCTACACTTAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATTCATGTTAATCCCAAGTATTTAGAAAGACAACGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGATGACCAAGAGATGCCTGGTAGAACTTTAGGTGTTTTACGATCATGGGTGGAACATAATGTTACTGTTAGCGTCAATTCACGTGAAAATGATCATCGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACTGGTGCATCCTATGGAAGCAATGAACTTGGTTCCAATATTTCAAGGAATATAGGCTTGGGTATCAGCCGACCTAGTGGTAGGGTGACTGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCAGGGACCATGCCTGGGCAAAGAAATGGTTTGAGTCACAAGTATAGTTTTTCAAGTACTGAAGCACCAAAGTCCATGGTTTTGGATGCACATCATCAACCGGCACATAATATAACTAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTAGTCATGGTACATCAATTGTTAGCAGCTTGAGCAAAGATGCTTGGACTGCTGATGATGAGAATTTGGAAGTTGAAGATCGTATCCAAGTCAGAAATCCTTTTGTGGTAAATGCTGATAGAGAATTAGCTATTGAATCTCGAGCCAATGAAAAGAAACAATTTCCTGCATCTCAACATCATTCATCACTATCATGGCCATTGCAGGAGCAGCATTCTATTCATGAGTTGAATCGAAAAGCTGGTCACTCCAGCAGATTTGTGTCCACACTTGGTGCCATACCTACCAATACAAATGTCTCCACTGCCAGAATGGGGAGTCGGCCATTCCTGTCAAGTGCAACCATAGGATTGCCAGGAATTGCAGGACCCTTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCTCCTTTGCAGCGGAGGTCTCCATCACCGCCAGTAAGTGTGCACTATTCTCATCCTGTGCAAAATTCGGCTGAGCAAGACCTTCCCCAGACATATAAGGCATCTGGGTTTCTGGGAGATCTGCAGAGCCACTATATTAAAGATTCTTCAACTGCTCTTCCCCCTAATATTCAGGATGGTCACTTACAAAGATCACAACTGAAAAATTTGCAGGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAATTGGGCACTTCTCTTGAGGTCACTGTTAAGACTGAGAAGCCACCTGTGTCCAAGGTTCCTTTAGTCAGAGAAACTAAAAGTAGCATGAGTACAGGGAATCTTCCAACTCGATTAGGTGTTCGGCCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCACAAGTGCATTACCATCTTCATTAGGTCCTTCTGGTGATAATTCATCTGCTCTCTCAAAAATGCCTCAAAGAAAGGCTGGACAACCACCTAGGTTATCTACTCTACCATCTGCTTCCTCTAATGTCAGCAGTGCCTCTGCCCAGACAAGTGATACCAGTAATAACTTGAATCCAATTGCCAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAATCAACATCTAAGGTGCCCTCTGAGTTGCTGACTCGACTGGAAGAAGAAAGCGATAGCATTACCATGGGTAACTCTTTGCCTGTGGCCTCAATTTCTGGTTCTGCAGCTGTTCCAGTCCCTTCAATCAAAGATGAGGTTGATGACACTGCAAGAACGCCCCTATCCTTGTCTGAATCAACCAGTCCAGGAGTCGTAAATCTCATTGGCTTTGAGTTTAAGCATGATATATTACGAGAATTCCATTCATCTGTAATTAGTGGATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAAAAACAGTTCAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGAGAATGGTTTAACTAAGGCATCGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATATGTATCAGAGAATGAGGCTGATTCTGTAGATACATATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTATGTTGTGCGGTGAGCTATTTGAAGATTTTTACTGTGAGGAAAGTGGGGAATGGATGTTCAAAGGAGCTGTTTACTTTCCTAACTCTAATAGCAACAGTGAGATGGGAACTGGAGATATGGGTACTGGAAGGGGTCCCATCATTCATGCAAATTGCTTATCAGATAACTTGATATCATGTGTCCCTGAGATGGTAAGACTTATCTTATTACTTGATATTCGTGGATAG 3114 0.4367 MENSRRLFDRSREPGPKKPRLMEELDPAPNSGARQFPQLQGISGNSTLLSARFRTNERDVESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQASEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVDDMTGAISNSNDDQEMPGRTLGVLRSWVEHNVTVSVNSRENDHRARRDAFNDSVPEKSTGASYGSNELGSNISRNIGLGISRPSGRVTESGHDKGWYNKSGVVAGTMPGQRNGLSHKYSFSSTEAPKSMVLDAHHQPAHNITSTQSSVISNSWKNSEEEEYTWDEMNSGLTSHGTSIVSSLSKDAWTADDENLEVEDRIQVRNPFVVNADRELAIESRANEKKQFPASQHHSSLSWPLQEQHSIHELNRKAGHSSRFVSTLGAIPTNTNVSTARMGSRPFLSSATIGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPVSVHYSHPVQNSAEQDLPQTYKASGFLGDLQSHYIKDSSTALPPNIQDGHLQRSQLKNLQGPFSSMTFQARHQQQLGTSLEVTVKTEKPPVSKVPLVRETKSSMSTGNLPTRLGVRPSRTGGPSPATLISSVSTSALPSSLGPSGDNSSALSKMPQRKAGQPPRLSTLPSASSNVSSASAQTSDTSNNLNPIANLLSSLVAKGLISAETESTSKVPSELLTRLEEESDSITMGNSLPVASISGSAAVPVPSIKDEVDDTARTPLSLSESTSPGVVNLIGFEFKHDILREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHATRDREENGLTKASRWYLKSSDWIVGKAEYVSENEADSVDTYGNEADRSQEDAMVVADENQCLCMLCGELFEDFYCEESGEWMFKGAVYFPNSNSNSEMGTGDMGTGRGPIIHANCLSDNLISCVPEMVRLILLLDIRG 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01069 1037 Pfam CID domain 91 200 IPR006569 -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 54 78 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 695 727 - -
Vimu3g01069 1037 Gene3D - 82 207 IPR008942 -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 213 273 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 242 271 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 1 41 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 555 576 - -
Vimu3g01069 1037 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 1 24 - -
Vimu3g01069 1037 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 45 1017 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vimu3g01069 1037 SMART 558neu5 85 207 IPR006569 -
Vimu3g01069 1037 ProSitePatterns Zinc finger C2H2 type domain signature. 878 898 IPR013087 -
Vimu3g01069 1037 CDD CID_Pcf11 87 199 IPR047415 -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 735 761 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 550 576 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 293 308 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 658 761 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 670 685 - -
Vimu3g01069 1037 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 293 323 - -
Vimu3g01069 1037 MobiDBLite consensus disorder prediction 213 233 - -
Vimu3g01069 1037 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01069 Vimu-Chr3 14810874 14817377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01069 73 425 C2H2 Transcription Factor Family AT4G04885 39.118 2.65e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01069 K14400 - gmx:100807857 1355.89