Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01063 ATGGAAATGGAAGATCACCATCACCACCACCGCCATCACCATCATCAGCATCACCATCACCATCACCACCAGCAGCATCAACATCAACATCAGCACAACTTTGGCGTCAACGATCTCAGGCAAGTCATCAATGGCCCGAGGACTTCCCACAACGCCTTCCTCTCCATGCCGCCGCACCCAACGGCGGACCTTTTCCCGGGCCACCGGAATCTCTCACCCTTGCCCACTCCCCAACACCACCAACAACACTACGAGGTTATGATGTTCGGTCGTGACATAATGCCACCCGGCCTTCACGACTTCACTTCCACACCCCACGATTCTGCTGCTGCTGCTGCTGCTGCAGCAGCAGCCACCATGACTCTACCCACTCCTCCCACCTTCGATGCCGAGGGTGCAGGTTGCATCGGTGGGGACCCCTCCACTGGAAGATGGCCCAGACAAGAGACCCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAACCACAAAGGACCCTTATGGGATGAAGTCTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACAAAAGATGGTAAGGCGGGGAGACATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTGTATGGAGATAACAGTAGCACTGTTTCAGTCCCAGAAACCAATGTTGTTGGCAGCATTCATTTTCAAGGAAGCAGCCATGACCCCTCCCAGACAAATCAAGATAAGTTTCAGTCTCACAATAGCAAGCATTGTGATAGCCTCAGCCTCACCAACTCCACTAACTTTGATACAACATCATCTGATGATGACAATGACCACCACAGTATGGAGAATGAGTCCATAGAGAAGAGGAGAAAGAGGAACAGTGGGAGGAGTTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTTGTGGAGAAGCAGAAGGAGTGGTTGGATAAACTTGTGAAGACACTGGAAGAGAAGGAGAAGGAGAGGATGTTAAGAGAGGAAGAGTGGAGGAAACAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAGTTTTGGGCAAAAGAGAGAGCGTGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTACAAAAGCTAACTGGAAGAGAAATAATGAAGCCTGAAACTCCCAATGATGGTATAAATTTAACGGCTGCTGAAGTTCAAAACCACAGTGAAAACCAGAATAATGAAGATGAGAGTGAAATCTTAAACAGCTGCAATGTTATCAGAGGTGGTGATAGGTGGCCAGAATCTGAAATCACAAGGCTTCAACAGCTGAGAGCTGAGATGGAGACAAGGTTTCCATGCAGCGAAATTTCAGAAGAGGTTTCATGGGAGGTAGTAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATGAGTAACTATCCAAGGGAGGGTGAGAAAGAAGGGAGCAAGAAGTGCAAGGAAAACAATAGAAACTGCTTTTTCTTCAAGAACAATGATGATCATCGACAATCTTCCTTATACGACCAAGGAAGTGCCTACTGTGATGATATCAGTGATCAAGGGAAAGAGATTGAGAGGCTACAAACAAATAATAGTTCTTCAACTTCAAAATCCAATGCTGGAAATGTTGATCCCTCTGATAGCTGCTTCCCCTTCTTGATGAGCAGTGAGGGTGGAAACTTGTGGGAGAATTACGGCCTAAAGATCAACAAAGAAAACCAAAACCAATGA 1827 0.4625 MEMEDHHHHHRHHHHQHHHHHHHQQHQHQHQHNFGVNDLRQVINGPRTSHNAFLSMPPHPTADLFPGHRNLSPLPTPQHHQQHYEVMMFGRDIMPPGLHDFTSTPHDSAAAAAAAAAATMTLPTPPTFDAEGAGCIGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRHDGKHYRFFRQLEALYGDNSSTVSVPETNVVGSIHFQGSSHDPSQTNQDKFQSHNSKHCDSLSLTNSTNFDTTSSDDDNDHHSMENESIEKRRKRNSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALQKLTGREIMKPETPNDGINLTAAEVQNHSENQNNEDESEILNSCNVIRGGDRWPESEITRLQQLRAEMETRFPCSEISEEVSWEVVATKMACFGYERSALMCKEKWESMSNYPREGEKEGSKKCKENNRNCFFFKNNDDHRQSSLYDQGSAYCDDISDQGKEIERLQTNNSSSTSKSNAGNVDPSDSCFPFLMSSEGGNLWENYGLKINKENQNQ 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01063 608 SMART sant 141 204 IPR001005 -
Vimu3g01063 608 SMART sant 442 505 IPR001005 -
Vimu3g01063 608 CDD GT1 144 209 - -
Vimu3g01063 608 MobiDBLite consensus disorder prediction 1 32 - -
Vimu3g01063 608 FunFam trihelix transcription factor PTL-like 145 207 - -
Vimu3g01063 608 ProSiteProfiles Myb-like domain profile. 137 202 IPR001005 -
Vimu3g01063 608 PANTHER FI21293P1 68 582 - -
Vimu3g01063 608 Pfam Myb/SANT-like DNA-binding domain 144 230 IPR044822 -
Vimu3g01063 608 Pfam Myb/SANT-like DNA-binding domain 444 529 IPR044822 -
Vimu3g01063 608 MobiDBLite consensus disorder prediction 249 288 - -
Vimu3g01063 608 ProSiteProfiles Myb-like domain profile. 445 503 IPR001005 -
Vimu3g01063 608 FunFam Trihelix transcription factor GT-2 446 508 - -
Vimu3g01063 608 CDD GT1 445 508 - -
Vimu3g01063 608 MobiDBLite consensus disorder prediction 289 309 - -
Vimu3g01063 608 MobiDBLite consensus disorder prediction 249 311 - -
Vimu3g01063 608 MobiDBLite consensus disorder prediction 8 29 - -
Vimu3g01063 608 Coils Coil 332 359 - -
Vimu3g01063 608 Gene3D - 446 507 - -
Vimu3g01063 608 Gene3D - 145 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01063 Vimu-Chr3 14656285 14659223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01063 29 604 Trihelix Transcription Factor Family AT5G03680 43.657 1.83e-137 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g01063 Myb_DNA-bind_4 4.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01063 - - aprc:113870891 882.478