Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01060 ATGGCTTCACTCAATTGCCATACACTTTCACTCACAACACACGCCTTCACACATCACATAGCCACCGCCGCCGCCACCACCACCATGTATTCTCATAATGCAACCGGCAGCAGCAGACCCTCTTCCGGAACCCCCCGCTACCGCGGCGTGCGCCAGAGGAGCAACGGAAAATGGGTGTCTGAGATCCGTGAGCCAAAAAAGCCTAGCAGGATTTGGTTAGGCACATTTCCCACACCTGAAATGGCCGCAGTGGCTTATGACGTGGCAGCTTATGCTCTCAAGGGTAAGGATGCGGAGCTGAATTTCCCTGACTCCGCTTACTCCCTTCCTGTCCCCGATTCACTCTCGGCGCGTGACATTCAGGTGGCGGCAGCCGCTGCGGCGGCGGCTGCCGGAGCTGCGAAGGATGCTATGCAGACGCCAACAGGGAATAATAACTCTTCAGGGGTACAAGAGAAGCAAGCAGGGACAAGTAACGAGTTCGTGGACGAGGATTTGATCTTTGACATGCCCAATGTTCTGGTGAATATGGCTCAGGGAATGCTGCTTAGTCCCCCTCCTTTTGACATTGGTGTTGAACCTAATAGCCCAGAAAACATCGAACATGAGACAAGCCTGTGGAATTTCCCATAA 633 0.5371 MASLNCHTLSLTTHAFTHHIATAAATTTMYSHNATGSSRPSSGTPRYRGVRQRSNGKWVSEIREPKKPSRIWLGTFPTPEMAAVAYDVAAYALKGKDAELNFPDSAYSLPVPDSLSARDIQVAAAAAAAAAGAAKDAMQTPTGNNNSSGVQEKQAGTSNEFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGVEPNSPENIEHETSLWNFP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01060 210 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Vimu3g01060 210 MobiDBLite consensus disorder prediction 31 56 - -
Vimu3g01060 210 MobiDBLite consensus disorder prediction 137 156 - -
Vimu3g01060 210 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Vimu3g01060 210 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Vimu3g01060 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 44 208 IPR045277 GO:0003700
Vimu3g01060 210 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Vimu3g01060 210 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Vimu3g01060 210 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Vimu3g01060 210 FunFam Ethylene-responsive transcription factor 2 46 104 - -
Vimu3g01060 210 MobiDBLite consensus disorder prediction 31 49 - -
Vimu3g01060 210 MobiDBLite consensus disorder prediction 138 156 - -
Vimu3g01060 210 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Vimu3g01060 210 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01060 Vimu-Chr3 14490152 14491302 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01060 36 210 AP2-EREBP Transcription Factor Family AT2G36450 58.919 5.91e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01060 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01060 - - pvu:PHAVU_007G222600g 348.206