Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01055 ATGCAGAAACGAAAAGCAGGGAGGAAGAAGTTCCATGAGACACGTCACCCTGTGTACAAAGGTGTTAGACAGAGGAACGGGAAATGGGTGTCTGAGTTACGACAACCTAATAACAAAAACGCACGTGTGTGGCTTGGAACCTTCGCAAGCCCCGACATGGCTGCTATTGCATACGACGTTGCTGCTTTGGCTTTTAAGGGTGATCGTGCTTCCTTGAACTTTCCTGACGCTATTTCTTCATTGCCGCGTCTCAACTCGGCTACATCCTCTGTCAGAACGATTCAGTTTGCCGCGTCACAAGCAGCGGAGAAGCACTTTTCTTGTGCTGAGATTCAAAAGCTGGGAGACGATCTTTCTTCAGAGGGCGGTTCTGGAAGCTTCTCATGGGATGAAGATTGTTCGGAGCTGTTGTTGGAAGAAGGTTCTAGAAAGTTCTTTTGGGATGAGGAGGAGGTGTTTAACATGCCGGAGTTGTTGAACAGCATGGCGGAAGCGTTGATCATTACACCCCCTGCTTTGCAGAAAGGGTTCAATTGGGTTGGTGGGGAAACCACAGTAGATTTGACTCTGTGGCGAAACTGA 582 0.4863 MQKRKAGRKKFHETRHPVYKGVRQRNGKWVSELRQPNNKNARVWLGTFASPDMAAIAYDVAALAFKGDRASLNFPDAISSLPRLNSATSSVRTIQFAASQAAEKHFSCAEIQKLGDDLSSEGGSGSFSWDEDCSELLLEEGSRKFFWDEEEVFNMPELLNSMAEALIITPPALQKGFNWVGGETTVDLTLWRN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01055 193 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vimu3g01055 193 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Vimu3g01055 193 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vimu3g01055 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 192 IPR045277 GO:0003700
Vimu3g01055 193 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vimu3g01055 193 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vimu3g01055 193 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vimu3g01055 193 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Vimu3g01055 193 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01055 Vimu-Chr3 14329758 14330793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01055 3 191 AP2-EREBP Transcription Factor Family AT4G25490 41.146 1.89e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01055 AP2 2.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01055 - - var:108324544 352.058