Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01054 ATGGCTTCCTATAAGCTTCTGATTGGTGAAGAGGAACCAACCATAGAATCAAAGATAGAAAACATGAAGTCCTTCGCACCAGGAGGACTCAGGCGCTGCCTGAATGATGATCGAAAGAAGAAAAAGAAGAAGGATTCTGGAGAGAATGAGGAGGAAATAGAAGTTCAGAATTTTGGAGAAGAAGGCAAGGATAAGAATAAGACTACAAATGAGGAAAAAGACTGCAGTATGGCATGTAAGTTTGCAAATAAGGAGGAATCATGCACTGCTGAGGAAATGGAAGAAGATGACAAAGAGAACGATGAACCCTCCAATCAGAAGAAATCTCGTTTAGTTTGGGATACTGAGTTGCACAACAAATTTCTTGCTTCCATTAATCAGCTCGAAATTGACAAGGCCTTCCCCAAGAAAATACTTGACTTGATGAATATTGATGGACTTTCAAGAGAAAACTTAGCAAGCCATCTCCAGAAATTCAGACTCGGTCTCAAAAAGCCCAATCCTTACCACCTATTTCCATTCTTTACGAAACAAACCTTTTGTCTGAGAGCTTACGTCGCCTGTGGCATCAACCTCAGAGGTTCCCTGAACTGCAAAACCCCCTTCTCTGAATCACTCTTACGAGCTCGGAATTTCTTAGAATTGAAACACATTTTGGAGGTGCCCACTTCTTTTCTCACACCCACTTCATTGTCACGGCCATTCACTGACATTGTTTATGGAAATCGGAATTGGTTTCTGACTATTTTGACAGAGCCATTGAGTTTTGCTGAGGAGTCATTTATTGTTAAGCAGCTCACGGGGCTTGAAGGTTGTGGCCATGATTTCATCTGGGTGGTGAGAAAAATTGATGAGGACGAAAGTAAGAAAGGGCTAAGTATAAGATTCATGACAACTTGGTTCGCTTCAGCTTTGGAGGTGAAGATTTTGAGGATTTGA 939 0.4143 MASYKLLIGEEEPTIESKIENMKSFAPGGLRRCLNDDRKKKKKKDSGENEEEIEVQNFGEEGKDKNKTTNEEKDCSMACKFANKEESCTAEEMEEDDKENDEPSNQKKSRLVWDTELHNKFLASINQLEIDKAFPKKILDLMNIDGLSRENLASHLQKFRLGLKKPNPYHLFPFFTKQTFCLRAYVACGINLRGSLNCKTPFSESLLRARNFLELKHILEVPTSFLTPTSLSRPFTDIVYGNRNWFLTILTEPLSFAEESFIVKQLTGLEGCGHDFIWVVRKIDEDESKKGLSIRFMTTWFASALEVKILRI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01054 312 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 70 166 IPR044841 GO:0003700|GO:0006355
Vimu3g01054 312 MobiDBLite consensus disorder prediction 18 72 - -
Vimu3g01054 312 MobiDBLite consensus disorder prediction 32 72 - -
Vimu3g01054 312 FunFam Two-component response regulator 104 166 - -
Vimu3g01054 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 161 IPR006447 GO:0003677
Vimu3g01054 312 SUPERFAMILY Homeodomain-like 106 165 IPR009057 -
Vimu3g01054 312 Gene3D - 104 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01054 Vimu-Chr3 14311071 14316374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01054 99 165 Response Regulator Gene Family AT4G31920 64.179 9.06e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu3g01054 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01054 - K14491 vum:124834863 190.66