Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01052 ATGCAAAGGAGAACAGTAGCAGTAGCGTATTATCTCTCCCTCTATTATTATTTAATAATAACAACACCATTTCACTCTCTCCCCTCCTTCCTCCAGCCCCTACATTTGAATCACCAACTCCTCTTTCTCTCTCTCTTTCTCACATTCTCTCTTGTTTCTACCCAAACCCCAAACCTAGCTTCCTTAATCATGGCCGAGAAGCACTTGCGGGACCTGCTTATGGAGGACCAAGAGCCCTTCCTTCTCAAACACTACATTTCGGAACGACGTGCCCTCCTCAAAACACCTTCCCCAAACACCACCTTAACCAAAAACACCTCAAACTCAAACTTCCCACTTAACAAATGCCTCCTCTCCTTCCACAACGCTACCAAATCTCCACTCTTGGAATTCGCGCCGCTCACCAAAAAGCACAGTCCCCTCAGGCCCTCCAACGCCAAAACCGCCACGCTCCTCCTTGAAGCCGCCCTCAGAATCCACAAACACGCCAAACCGAAGCCAAACAGGGCCTTGGGCATCTTCGGCTCGCTCTTCAAGAAACTCAGGACCCAACGGAAGAGGGGACATATAAACGATGATGTTGTTGGTGTTGGATTGGTGGGATCCTGCGAGGGCAGACTCAGCATTAGTGGCTTGTGGTCAGAGAGCGAGAGCAACGAGGACAAGTCTTTGGACTTGAAAACTTGTAGTAGTGACCACTCCTTTGATGACTCCGTCGAACAAGAGATTCAGTTCCTCAACTCTCATGATCTCTTCTTCTGCCAAACCCCTTTCCGTTTCTCACTCCGACAGATCCCCGACTACTCCCCCGGCCGCACGCCGGAATTCTCTTCGCCGCTCGCGTCTCCCCGTCGCCACACAACTCAGGACAATGAAGTTAGTAGTGGTGATGGCGTCAACAAATTTCAATCTGGGGAAGAAGAGGAAGATAAAGAACAATGCAGTCCAGTGTCTGTTTTAGACCCACCCTTCGATGACGATGACAACGACCATGGAGAAGATGGTTTTGATTTGGACTGTAACTATGCCAATGTTCAAAGAACTACGCAGAATCTACTAGACAGGCTCCGTAGATTTGAGAAGCTTGCAGAGCTAGATCCAGTGGAGCTTGAGAAGAGGATGTTAGACCAAGAAGATGAAACGTTTATGGAAGAGGATGATGATTACGATGATGTTGAGAGCGAAAGAAAATGTGGAGAAGAAAATGTTGTCGGGGAAAGTGTGGTTGAAATCCTGAGCCATTCAAGAGTTGATGAGAAGCAGGAAGCAGCTGAGGACCTTAAGAGGCTGGTTTATGATCTGATAATGGAGGAAGAGACAGAAGTGAGTTGCTCAGAAGGGAGGAACACAGTGGTGATGAGAAGGGTTTGCAGGAGGCTGGAGTTATGGAAGGAAGTGGAGTGCAACACCATTGATATGATGATTGAAGAGGATTTCTGCAGAGAAGAAGGTATTTGGAAGAAAAATGGTGAGCACAGAGTGGAGCTAGTTGAGGAAGTTGAGCTTGCAATCTTTTTCTATCTAGTGGAGGAACTTTCAGATGAACTAGTATGTTGTTAG 1560 0.4737 MQRRTVAVAYYLSLYYYLIITTPFHSLPSFLQPLHLNHQLLFLSLFLTFSLVSTQTPNLASLIMAEKHLRDLLMEDQEPFLLKHYISERRALLKTPSPNTTLTKNTSNSNFPLNKCLLSFHNATKSPLLEFAPLTKKHSPLRPSNAKTATLLLEAALRIHKHAKPKPNRALGIFGSLFKKLRTQRKRGHINDDVVGVGLVGSCEGRLSISGLWSESESNEDKSLDLKTCSSDHSFDDSVEQEIQFLNSHDLFFCQTPFRFSLRQIPDYSPGRTPEFSSPLASPRRHTTQDNEVSSGDGVNKFQSGEEEEDKEQCSPVSVLDPPFDDDDNDHGEDGFDLDCNYANVQRTTQNLLDRLRRFEKLAELDPVELEKRMLDQEDETFMEEDDDYDDVESERKCGEENVVGESVVEILSHSRVDEKQEAAEDLKRLVYDLIMEEETEVSCSEGRNTVVMRRVCRRLELWKEVECNTIDMMIEEDFCREEGIWKKNGEHRVELVEEVELAIFFYLVEELSDELVCC 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01052 519 MobiDBLite consensus disorder prediction 280 301 - -
Vimu3g01052 519 MobiDBLite consensus disorder prediction 270 337 - -
Vimu3g01052 519 PANTHER OS04G0572500 PROTEIN 64 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01052 Vimu-Chr3 14275449 14279055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01052 66 517 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 30.162 3.48e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01052 - - vra:106769918 856.67