Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01048 ATGGGTTCATTCTCTGGCACTTGTGAAATTGTAGAAGCAAGGGATGACCTAAATACAGAGAAAGCTGCCGGGATATATCAGTCCAATTCTGGATATAGCTTGGATGAAAAAAACCAGAAGCATCCTGTGCTGAAACAGGGATATAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCAATTACTCTTAAATCTTCATCAAGGGATTCTGGCCTTTTACAGGATGGTACAAGCCCTAAGATGAAAAGTTCATTGAAAAAACCAATTACAGTGGGTGCTTCTCGGTCCCCACGAGTTGGATATTCTGAGCCTTTGACTTTGAAGCAGGCTTTAAGAGACCTATGCATATCTAAGGCATCAGAAATGGCTGCCATGAAAAGATTATCAAAGTCAACTGCTTCTCCAAGAATATCTGAGGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGTTGAAGGTAGACAATCTGGGCCTTCTAATGTTGAGAGTAAAGGGAGTACAAGCGAAATATCTCTAGTGCCAGAAGAGAGCAGCTCACATGCCTTGGATAAAGCTTCCCAGTCTCATCCAACTGTTAAAAGCACATCACTAAGCCAAAATGTTCAATCTTCCAAAATTTCTGCTGCAACTACTGAAAATGGTACCGGGGCTTCATTGATAGGTGACTTGGCTAGTTCATCAAATAAAGTTGGGGTTCTATCGCAGTCTTCGGAACCTTCTCAAATAGAAAAACAAACATATGCATCTTCTCCATCTAGTTGTAACACTAATGGAAGTATGTTAGACTTGTCTGAAAATGCTTCTTCCTCTAATAAATTAGGAAATAAAGCATGTGTATCGAAGAATGGGCACAAAGATAGGTTACAAACAGTCTGTTCCTCATCTACTTCAGTAAATGGCAGCAGAGTGTGCAAACTGTCACGGCATGCCCCTCGTACAGTCAAATCAATTATCAAGAACAAAGGTTTGGGTAAGAAAAAACTAAAGCAGGATTCCTTTTCTGCTGTATTTGATCCTACATCCAATGAAGTAAATAACCAGTCAGTTACTAGTACAACTCAACTTGTTTGTGAGAGATGCTGGTGTGCTATAGAAAACAACAAAGGTATTATATCATTGGACTCTACTAGTTCTGGACATGGAATAAACTCTGTTAATGTGCACTCAGGCTCAGCACCAGCTGGCTGTAATAGCGCCAGAGAAGTTACAAAAGTGAAAAAGAATACCGTATTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGACTACAGTAGTAGTACAAGTACAAGTGATGAGAGTAATCTCAGTGGGGCTAGTTGTGGCAATAGGCCTCACATGTCAAAGGATGTTAGATGGGAGGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTGAGGAAGTTAGGTTGTGGAGACATTGGAACTGTATATCTTGCTGAGCTAATTGGCAAAAGTTGTTTGTTTGCTATCAAGGTGATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGAATACTGGATCATCCTTTTCTTCCAACACTGTATGGGCAGTTTACATCAGATAATTTATCATGTCTGGTCATGGAGTATTGTCCAGGTGGTGATCTTCATGTTCTACGGCAGAAACAGCTTGGTAGAAGTTTTTCAGAGCCAGCAGCTAGATTTTATGTAGCTGAAGTCCTTCTTGCTTTAGAGTACTTGCACATGCTTGGAGTGGTTTACCGTGATTTGAAGCCAGAAAACATTCTTGTTCGAGAAGATGGTCACATTATGCTGACAGATTTTGATCTGTCACTTAAGTGTGATGTTAGCCCGACGCTTCTGAAGTCATCTGATGTGGATCCTGCTAAGAATTCTGGTCCTTGTGCACAATCTAATTGCATTGAGCCATTTTGTATTGAACCATCCTGTCAAGTTCCATGCTTCAGCCCCAGACTCCTACCTCCTGCCGCAAAAACAAGGAAATTAAAAACAGATCTTGCTGCCCATCTCAGATCATTGCCACAGCTCGTGGCTGAACCCACCGACGCAAGATCAAATTCATTTGTTGGTACACATGAATATTTGGCGCCTGAGATAATCAAAGGAGAGGGACACGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTATATGAACTCTTATATGGCAGAACACCCTTTAAAGGTTGTAATAATGAAGAAACATTAGCCAACGTGGTGTTGCAAGGTCTCAGGTTCCCTGATACCCCATTCGTTAGTTTCCAAGCGAGGGATCTCATTAGGGGGTTGTTGGTTAAAGAGCCTGAAAATCGTTTGGGTACAGAGAAAGGGGCTGCTGAGATAAAACAGCACCCATTCTTTGAAGGCCTTAATTGGGCCTTAATTCGTTGTGCTATCCCACCAGAACTTCCAGACTCGTGTGAATTTGGAGTTTCAGAGATGACTCCACAGTCCCAGTGCAAGGGTATTCAGTATGTAGAGTGTAATGCAGCAGGAGAGCAAGTGGAATTTGAGTTGTTTTAA 2589 0.4121 MGSFSGTCEIVEARDDLNTEKAAGIYQSNSGYSLDEKNQKHPVLKQGYKDNLDDDINKLFESITLKSSSRDSGLLQDGTSPKMKSSLKKPITVGASRSPRVGYSEPLTLKQALRDLCISKASEMAAMKRLSKSTASPRISEVGKIQTLYNSVVVEGRQSGPSNVESKGSTSEISLVPEESSSHALDKASQSHPTVKSTSLSQNVQSSKISAATTENGTGASLIGDLASSSNKVGVLSQSSEPSQIEKQTYASSPSSCNTNGSMLDLSENASSSNKLGNKACVSKNGHKDRLQTVCSSSTSVNGSRVCKLSRHAPRTVKSIIKNKGLGKKKLKQDSFSAVFDPTSNEVNNQSVTSTTQLVCERCWCAIENNKGIISLDSTSSGHGINSVNVHSGSAPAGCNSAREVTKVKKNTVLKEQLEFSQSSKSSQGDYSSSTSTSDESNLSGASCGNRPHMSKDVRWEAIRHAQMQHGVLGLRHFNLLRKLGCGDIGTVYLAELIGKSCLFAIKVMDNEFLARRKKMPRAQTEREILRILDHPFLPTLYGQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLKCDVSPTLLKSSDVDPAKNSGPCAQSNCIEPFCIEPSCQVPCFSPRLLPPAAKTRKLKTDLAAHLRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGCNNEETLANVVLQGLRFPDTPFVSFQARDLIRGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDSCEFGVSEMTPQSQCKGIQYVECNAAGEQVEFELF 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01048 862 MobiDBLite consensus disorder prediction 157 202 - -
Vimu3g01048 862 SUPERFAMILY Protein kinase-like (PK-like) 456 827 IPR011009 -
Vimu3g01048 862 MobiDBLite consensus disorder prediction 419 449 - -
Vimu3g01048 862 Gene3D Phosphorylase Kinase; domain 1 476 557 - -
Vimu3g01048 862 MobiDBLite consensus disorder prediction 419 450 - -
Vimu3g01048 862 MobiDBLite consensus disorder prediction 70 86 - -
Vimu3g01048 862 FunFam Serine/threonine-protein kinase D6PK-like 476 561 - -
Vimu3g01048 862 Gene3D Transferase(Phosphotransferase) domain 1 702 821 - -
Vimu3g01048 862 ProSiteProfiles Protein kinase domain profile. 478 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01048 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Vimu3g01048 862 FunFam serine/threonine-protein kinase D6PK-like 704 827 - -
Vimu3g01048 862 MobiDBLite consensus disorder prediction 70 89 - -
Vimu3g01048 862 CDD STKc_phototropin_like 476 827 - -
Vimu3g01048 862 PANTHER FLIPPASE KINASE 1-RELATED 207 831 - -
Vimu3g01048 862 FunFam serine/threonine-protein kinase D6PK-like 562 629 - -
Vimu3g01048 862 Gene3D Transferase(Phosphotransferase) domain 1 558 627 - -
Vimu3g01048 862 Pfam Protein kinase domain 479 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01048 862 Pfam Protein kinase domain 706 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01048 862 SMART serkin_6 478 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01048 862 MobiDBLite consensus disorder prediction 234 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01048 Vimu-Chr3 14028186 14033138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01048 1 862 AGC Kinase Gene Family AT3G52890 53.138 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu3g01048 Pkinase 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01048 - K08286 gmx:100813470 1477.23