Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01047 ATGGCTGGAGATATTAAGGAGAGAACTTTGGCAATAGGGTATTCTTTTCTTTTACTGCTATTGACTTCACTTCTTTGTAGCACCGAGGGTTTGATCACTGAGGGGCAAATCTTGCTAGAGCTTAAGAATGGATTTCATGATAAATCTAATGTTTTGGAAAGTTGGAAGCCTACTGATGAAACCCCGTGTCGATGGAAAGGTGTAAATTGCAGTCATGGTAGTGATAACAATCGAGTAGTTACGTCGCTTAATTTGACTTCAATGGGTCTTTCTGGAACTCTAAATGCTGCTGGCATTGGGGGTCTGACCCATCTGACTTATCTCAATCTTGCCTACAATGGGTTGACTGGGAATATCCCGAAGGAGATTGGTGATTGCTTGAATTTGGAATATCTTTATTTGAATAATAATCAGTTTGAGGGCACAATTCCGGCTGAATTGGCCAAGCTGTCTGTTTTGAGAAGTTTGAATATTTACAACAACAAACTCTCTGGTGTGATTCCATATGAGTTTGGGAACTTGTCTTCAATGGTTGAGCTAGTGGCCTATAGCAACTTTCTTGAGGGACCCCTGCCTAATTCCATTGGAAATCTTAAGAATCTTGTAAATTTCAGAGCTGGGGCAAATAACATTACTGGTAACTTGCCAAAGGAAATTGGTGGATGTAAGAGCTTAATGCTTCTTGGTCTTGCACAAAATCAGATAGGAGGGGAGATACCAAGGGAGATTGGGATGCTTGCCAACTTGAAAGAATTGGTTTTATGGGGAAACCAGCTTTCAGGACCTATTCCTAAAGAGATTGGGAATTGTAGCAGTCTTGAGAAAATTGCTATTTATGGGAATTATCTTATTGGACCTTTACCTAAGGAAATAGGGAACCTCAAATCCTTGAGGTGGTTGTATGTTTACAGAAACAAGTTGAATGGAACCATTCCCAGGGAAATTGGAAATCTTACTTCATGTTTAGACATTGATTTCTCAGAGAACTCTTTAGTAGGTAGTATCCCTTCAGAGTTTGGTAAAATAAATGGTCTAAGTTTGCTGTTTCTATTTGAGAACCATCTAACTGGTGTTATACCAAATGAGCTTAGTAGCTTGAAGAACCTGTCAAAGCTAGACCTGTCAATAAATAATCTCACAGGTCCAATTCCATTTGGCTTCCAATATTTGAGTAAAATGAACCAGTTGCAACTTTTTGACAACTCCCTGAGTGGTATTATTCCCTCGGGACTTGGATTTCATAGTCCCCTTTGGGTTGTTGACTTTTCTGACAACAACTTGACAGGAAGAATACCCCCTCATCTGTGCAGATATTCTCGTTTGATGTTGTTGAATCTTGCAGCTAATCATCTTTATGGAAATATACCAACAGGTATACTAAAGTGTAAATCATTGGCACAGTTGTTGATACTTGGAAACATGCTTACTGGCAGCTTCCCTTTAGAATTGTGTAGGCTGGAGAACTTGACTGCCATTGATTTGAATGAAAACAGGTTCAGTGGTACACTCCCTTCTGATATTAGCAACTGCCACAGGTTGCAAAGGCTTCATATTGCCAACAATTACTTCACATTGGAGTTGCCTAAGGAAATAGGTAATCTCTCTCAGTTGGTTACCTTTAATGTTTCGTCAAATCTTTTCACTGGAACAATCCCACCTGAGATTTTTCAGTGTCAAAGACTACAAAGACTTGACCTCAGCCAGAATAACTTTTCTGGTTCCTTACCTGGTGAGATTGGAACACTTCAGCACTTGGAGATTCTTAAGCTTTCAGACAATAGGCTGTCTGGATATATTCCTGCAGCACTAGGCAATCTGTCTCATTTGAACTGGTTGTTGATGGATGGTAACTATTTTTTCGGCGAAATACCTCCTCAGTTAGGTTCTCTTTCAAGCTTGCAGATTGCAATGGATCTCAGTTACAATAACCTTTCTGGAAAAATACCAGTTCAGCTTGGCAGTCTCAACATGCTTGAATATCTCTATCTCAATAACAACAATTTGGATGGTGAAATTCCCAGCACATTTGAAGAGCTATCAAGCTTGTTGGGTTGCAATTTCTCATTCAATAACCTCTACGGACCTATTCCTTCCACTAAAATTTTCCAAAGTATGGCTGTGAGCAGCTATATTGGTGGTAAGAATGGCCTCTGTGGTGCACCTCTCGGTGACTGCAGGACCAATTCTGCCTCTCACTCTGGTACTTCAGGGAAAAGTTTTGATTCTCGTCGCGCAAAAATAGTCATGATCATTGCAGCTTCTGTTGGTGGTATTTCACTCGTTTTCATCTTAGTTATTTTATATTTTATGAGACGTCCTAGAGAGTCAATTGATTCCTTTGGAGGCACTGAGGCTCCCTCCCCAGATTCAGATATCTATTTCCCTCGAAAGGAAGGTTTGACATTCCATGATCTAGTTGAAGCTACAAAAAGATTTCATGAAAGCTATGTTATTGGTAAGGGAGCATGTGGAACCGTGTATAAGGCAGTGATGAAATCTGGTGAGACCATTGCTGTTAAGAAGTTAGCATCAAACAGGGAAGGGAACAACATTGAGAATAGCTTCAGAGCTGAAATATCAACTCTGGGAAGAATAAGGCATCGGAACATAGTGAAATTGTATGGCTTTTGCTACCACCAGGGTTCCAATCTCCTGCTTTATGAGTACATGGAAAGAGGTAGCTTAGGTGAACTATTGCATGGTTCTGCAACTACTTTGGAATGGTCAACTAGGTTCATGATTGCACTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCAAAAATCATCCACCGTGATATAAAATCTAACAACATTCTCTTGGATGAAAATTTTGAGGCTCATGTTGGTGATTTTGGTTTGGCAAAAGTGATTGACATGCCCCAGTCAAAATCAATGTCTGCTGTTGCTGGATCTTATGGCTATATTGCTCCGGAATATGCATATACCATGAAGGTGACAGAAAAGTGTGACATCTACAGTTATGGTGTTGTGCTTTTGGAATTGCTGACTGGAAGAACACCAGTTCAGCCACTAGATCAAGGAGGAGATCTTGTCTCATGGGTGAGAAACCATATCAGGGATCACGACAATTCGTTGACGCCGGAGATACTTGATACTCATGTTGATCTGGAAGACCAAACCACAGTGAATCATATGCTCACTGTTTTGAAGCTTGCTTTAGTATGCACAAGTGTGTCTCCTACAAAGAGGCCATCAATGAGGGAAGTTGTGAAGATGCTTATTGAGTCCAATGAGAGAGAAGGAAACTTAACACTCACTCAAACACACCTTGATCTTCCTTCCAAAGATGGCTTGTGA 3333 0.4056 MAGDIKERTLAIGYSFLLLLLTSLLCSTEGLITEGQILLELKNGFHDKSNVLESWKPTDETPCRWKGVNCSHGSDNNRVVTSLNLTSMGLSGTLNAAGIGGLTHLTYLNLAYNGLTGNIPKEIGDCLNLEYLYLNNNQFEGTIPAELAKLSVLRSLNIYNNKLSGVIPYEFGNLSSMVELVAYSNFLEGPLPNSIGNLKNLVNFRAGANNITGNLPKEIGGCKSLMLLGLAQNQIGGEIPREIGMLANLKELVLWGNQLSGPIPKEIGNCSSLEKIAIYGNYLIGPLPKEIGNLKSLRWLYVYRNKLNGTIPREIGNLTSCLDIDFSENSLVGSIPSEFGKINGLSLLFLFENHLTGVIPNELSSLKNLSKLDLSINNLTGPIPFGFQYLSKMNQLQLFDNSLSGIIPSGLGFHSPLWVVDFSDNNLTGRIPPHLCRYSRLMLLNLAANHLYGNIPTGILKCKSLAQLLILGNMLTGSFPLELCRLENLTAIDLNENRFSGTLPSDISNCHRLQRLHIANNYFTLELPKEIGNLSQLVTFNVSSNLFTGTIPPEIFQCQRLQRLDLSQNNFSGSLPGEIGTLQHLEILKLSDNRLSGYIPAALGNLSHLNWLLMDGNYFFGEIPPQLGSLSSLQIAMDLSYNNLSGKIPVQLGSLNMLEYLYLNNNNLDGEIPSTFEELSSLLGCNFSFNNLYGPIPSTKIFQSMAVSSYIGGKNGLCGAPLGDCRTNSASHSGTSGKSFDSRRAKIVMIIAASVGGISLVFILVILYFMRRPRESIDSFGGTEAPSPDSDIYFPRKEGLTFHDLVEATKRFHESYVIGKGACGTVYKAVMKSGETIAVKKLASNREGNNIENSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSATTLEWSTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLDQGGDLVSWVRNHIRDHDNSLTPEILDTHVDLEDQTTVNHMLTVLKLALVCTSVSPTKRPSMREVVKMLIESNEREGNLTLTQTHLDLPSKDGL 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01047 1110 Pfam Protein kinase domain 813 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01047 1110 ProSiteProfiles Protein kinase domain profile. 812 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01047 1110 Gene3D Ribonuclease Inhibitor 282 387 IPR032675 -
Vimu3g01047 1110 SMART LRR_typ_2 655 678 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 534 558 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 582 605 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 486 510 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 294 318 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 366 389 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 150 173 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 102 126 IPR003591 -
Vimu3g01047 1110 SMART LRR_typ_2 246 270 IPR003591 -
Vimu3g01047 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 414 729 - -
Vimu3g01047 1110 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 192 285 - -
Vimu3g01047 1110 Gene3D Ribonuclease Inhibitor 31 184 IPR032675 -
Vimu3g01047 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 782 889 - -
Vimu3g01047 1110 SUPERFAMILY RNI-like 323 699 - -
Vimu3g01047 1110 SUPERFAMILY L domain-like 52 404 - -
Vimu3g01047 1110 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Vimu3g01047 1110 Pfam Leucine Rich Repeat 658 679 IPR001611 GO:0005515
Vimu3g01047 1110 PANTHER UNNAMED PRODUCT 17 116 - -
Vimu3g01047 1110 SUPERFAMILY Protein kinase-like (PK-like) 792 1085 IPR011009 -
Vimu3g01047 1110 Gene3D Ribonuclease Inhibitor 388 729 IPR032675 -
Vimu3g01047 1110 Gene3D Transferase(Phosphotransferase) domain 1 890 1102 - -
Vimu3g01047 1110 Pfam Leucine rich repeat 560 618 IPR001611 GO:0005515
Vimu3g01047 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 286 390 - -
Vimu3g01047 1110 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vimu3g01047 1110 Gene3D Phosphorylase Kinase; domain 1 788 889 - -
Vimu3g01047 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 933 945 IPR008271 GO:0004672|GO:0006468
Vimu3g01047 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 890 1102 - -
Vimu3g01047 1110 Gene3D Ribonuclease Inhibitor 185 281 IPR032675 -
Vimu3g01047 1110 SMART serkin_6 812 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01047 1110 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 30 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01047 Vimu-Chr3 13944977 13948484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01047 51 1085 Receptor kinase-like Gene Family AT1G73080 37.743 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g01047 Pkinase 2.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01047 - - gmx:100805792 1925.21