Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01046 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGCTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGGTAGGAGTACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCCATAGATAACATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCCACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTAGTGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCTGTTGCTGATGGGGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCATAAGCGGAAGAGCCCTGGAGTTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCTGATCATGTGAATATGACACCCTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAAAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCTACCATGGTAGATCTTTCTACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCTTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAGTCATGAGGCTAATCATTTCCTTGTTGGAAATGGTTCTAGTAATGCTCCAGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAGTAATTGTCCGGCTCAACCTGCTAGAGGAGTTCGCACTAACTACTCTCAAAGATCTACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGCATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTTAATGATCAATTTAACTTTGAGGTATCTATTGCATCTTCTCTCAAGAGCTTTGTTCTTGTGATTTTGGGCTTTAGTTCCGCTGGGAGACTGAAATTTGTTCTTTCATTGAGGGTGTATGACTCAAGTTTGGTTTTATTGTTCTTACAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGATTGATCAACATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGTCAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAATGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1809 0.4207 MGHRHLYSSSPMLDGEPDQNWNHMHTDQQYVNLGRSTTSDNGSFIYPMENMSIDNISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSSDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVADGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSTMVDLSTQTSGSLTRDWSQMSVCLAHGRVPSSDANAFSHEANHFLVGNGSSNAPVDVGGFHNEFGTSRNPTAPQSFHSNCPAQPARGVRTNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEVSIASSLKSFVLVILGFSSAGRLKFVLSLRVYDSSLVLLFLQGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSESSQEEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01046 602 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 514 595 - -
Vimu3g01046 602 ProSiteProfiles Zinc finger RING-type profile. 549 591 IPR001841 -
Vimu3g01046 602 SUPERFAMILY RING/U-box 539 594 - -
Vimu3g01046 602 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 145 595 IPR045191 GO:0061630
Vimu3g01046 602 CDD RING-H2_RNF24-like 548 594 - -
Vimu3g01046 602 MobiDBLite consensus disorder prediction 138 159 - -
Vimu3g01046 602 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g01046 602 MobiDBLite consensus disorder prediction 334 359 - -
Vimu3g01046 602 Pfam Ring finger domain 548 591 IPR001841 -
Vimu3g01046 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 595 IPR013083 -
Vimu3g01046 602 SMART ring_2 549 590 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01046 Vimu-Chr3 13910390 13920172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01046 1 601 C3H Transcription Factor Family AT2G37150 38.725 2.13e-101 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01046 - - gmx:100786013 925.62