Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01044 ATGACTTTCGGTTTGGTGTACACTGTCTACACTACCGACGTTGACCCTAAGAGGGGTAGTTTGGGAACCATCGCTCCCATCGCCATTGGTTTCATCGTTGGCGCTAACATTTTGTTGGGTGGGGCCTTCTCTGGAGCAGCCATGAACCCTACCGTTACATTCGGGCCTACCGTTGTTAGTTGGACTTGGGAAAACAACTGGATCTACTGGGTCGGCCTTCTCATCAGTGGTGGCATCGCCGGAGTCATCTACGAGGTCGTCTTCATCATTTATGCATCCTCTCTATGTCTCTCTCTTTCTCACCTAGTCCACCATGGATGTATCATTATTGGGGTCTGGCTGAATGTACCATTTCACTGTTGCTTCTGTCGAATTGAAATGTTTTCCTCTTTTTTTTCTCACTTGTTGCACAGTTCTAATTTATTAACCCTTAATCTATCAATCATTGCGATAATGAACAAACTATCCAGAGAAGAAGATTGA 483 0.4513 MTFGLVYTVYTTDVDPKRGSLGTIAPIAIGFIVGANILLGGAFSGAAMNPTVTFGPTVVSWTWENNWIYWVGLLISGGIAGVIYEVVFIIYASSLCLSLSHLVHHGCIIIGVWLNVPFHCCFCRIEMFSSFFSHLLHSSNLLTLNLSIIAIMNKLSREED 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01044 160 Gene3D Glycerol uptake facilitator protein. 1 94 IPR023271 -
Vimu3g01044 160 SUPERFAMILY Aquaporin-like 1 93 IPR023271 -
Vimu3g01044 160 PRINTS Major intrinsic protein family signature 30 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01044 160 PRINTS Major intrinsic protein family signature 67 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01044 160 Pfam Major intrinsic protein 1 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g01044 160 ProSitePatterns MIP family signature. 47 55 IPR022357 -
Vimu3g01044 160 PANTHER AQUAPORIN-8 1 90 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01044 Vimu-Chr3 13746585 13747067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01044 1 89 Major Intrinsic Protein MIP AT2G36830 79.775 5.01e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01044 K09873 - gmx:547967 161.384