Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01042 ATGGCTTTGCAAAGTAGTAGAGGCCACCACAAGTGCACAACCTGCCCCAGCTCTACATACATTCTAAGTCTGGACGAGTATAGAGCAGTAGCTGATGACGTGCCTTTGGAGCAAGCCTTGAAGACTGCCGAAGACCCAGCTCCTATTCTGCGCCAACTGAAACCACCAGATCGAACTCCGCTTCAACAGTCATCGGTTGGTTGTTGTCGGCAACAACCGTCGCAACTCAGAGATCTTATGAGTGTCATCGACATTCTCACCAGAGTCGATTCCATTTGCAAGAAGTATGACAAATACGACGTCGAGAAGCACCGCGATTCTAATGTCTCTGGCGATGATGCCTTTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCATTGCTTCAGGTATGCCGCCGAAACTACTATGACTCAATTTGTGCCCTAGCTGGAGAATTTTTCTGCAGAGTCACGGAATTAGGGGTTTCTCTAATGAAAGCAGAAACGGCTTCCAAGGAGAAAGGTAAGGCATCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGACTGGCTGTGAAAAAGGTTAAGGGTTTATCTTCACAAGAATTTGCTGCCCGTAATGATTTAGCTCTTTCATTGCCAGATAGAATCCAAGCCATCCCAGATGGGTCTCCTCCTGTGCCAAAACAAACTGGAGGCTGGGCTTCTTCTGCCTCACGTCCTGAAATTAAGTTTGACTCAGTTATCATATTTCATCCGTGGGAGCCTTTTTATCTATTGACTCTGCTAAAGTGTGTGAATCATGCAATCATCTCATTTACAGATGGGCAATTTGATGATGATTACTTTCAACAGTCTGAGCAATCAAGCCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGATCAAGGTTTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAACATGGCACATGATATGAATGAGGAACTGGATCGACAAGTTCCTCTCATGGATGAGATTGACACTAAGGTGGACAAGGCATCCTCGGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTAAACCAGGTTATCTAA 1119 0.4567 MALQSSRGHHKCTTCPSSTYILSLDEYRAVADDVPLEQALKTAEDPAPILRQLKPPDRTPLQQSSVGCCRQQPSQLRDLMSVIDILTRVDSICKKYDKYDVEKHRDSNVSGDDAFARLYASVDADIEALLQVCRRNYYDSICALAGEFFCRVTELGVSLMKAETASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLALSLPDRIQAIPDGSPPVPKQTGGWASSASRPEIKFDSVIIFHPWEPFYLLTLLKCVNHAIISFTDGQFDDDYFQQSEQSSQFRQEYEMRRMKQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQVI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01042 372 Gene3D - 305 366 - -
Vimu3g01042 372 FunFam Putative syntaxin-71-like 305 366 - -
Vimu3g01042 372 PANTHER SYNTAXIN 177 367 IPR045242 -
Vimu3g01042 372 SMART tSNARE_6 300 367 IPR000727 -
Vimu3g01042 372 SUPERFAMILY SNARE fusion complex 300 365 - -
Vimu3g01042 372 CDD SNARE_Qc 310 365 - -
Vimu3g01042 372 ProSitePatterns Syntaxin / epimorphin family signature. 311 350 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu3g01042 372 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 305 367 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01042 Vimu-Chr3 13707133 13711432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01042 80 371 SNARE and Associated Proteins AT3G09740 60.884 3.15e-120 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01042 K08506 - gmx:100819272 395.971