Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01041 ATGCAAATGATGCCCGGTGATCCCTTTTCCCTATCCACTTCCATAGGAGGCTTCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAACCCCCCTCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCGCCAAAGACCCTCATGGCGACCAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCATGGAAGCTACGACAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGTCCCGAACAATCCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAATGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAAACCTGCGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGAAAGGACAGCTTCATTACCCACAGAGCATTTTGCGATGCCTTGGCAGAAGAGAGTGCGAGACTCACCTCAGTCACCTCAACAAATCTAAATTTCAAGAGCGAAGAGGGTGGTAATGTGATGAACTCGCAGGCTGGTTTGGGAGGGCATGGACTGATTGCAGCAGCAGCAGCAGCACAAAGTCTTCAAAATGTTTCTGGCATTCAACAATTCGGTCCACATGGTTTTCGCGTGGATTTTAATGGGATGGAACAACCAAGGCCTAGCTTGTCGCTGTGGTTGAACCAGGGGAATCCCCAGTTGAATAATAATAACAGTAATGTTAACGGCAACAATAGTGGTACCGATGTGGGACCCAATTACATGTCGTCATGCTCTTCTTCAGGTTTGCCTGATATTGTGCAAATGGCTCAGGCTAATGCTTTGATGGGTTCTACATCGATGGTGTCTAATTTTGGAGTGCCTGCGGGTTCTAATTCTACCAGTGCAAATCTTTCTCTGTCGTCACTTCCTATTGGTAAAAGAGGGGAAGCAGGTGGAACTGTAGTGGACTTGGCGTCTATTTATAACTCAGAGGGTCCAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCGCAGATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTCGGTTCACCTTCCTCGCAAACTACCAGTCTCAATAATAACAACAACGGCGCTGCAGCCATGATGCTGGGAAGTAATACCACTCCTGCAACCGATTTCACCTCAATGACGCATTCACCAAACGGTTTTGACCAACTCGTGATGCAAACCAATGCGCAGCTGCAAAGTGAGCCTATGAAGTTAAAGCTTCGTTCAAGCGCCGTGGAGCACAATTTGACAAGGGATTTTCTCGGAGTCAGCGGAGGTGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGACCTCAGTTCCTACCACAAGAACTGGCAAAGTTTGCTTCCATGGGGTCGCCTATGGGGTTGAGCCATTTCACAGGCAACCAATGA 1581 0.4864 MQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSTNLNFKSEEGGNVMNSQAGLGGHGLIAAAAAAQSLQNVSGIQQFGPHGFRVDFNGMEQPRPSLSLWLNQGNPQLNNNNSNVNGNNSGTDVGPNYMSSCSSSGLPDIVQMAQANALMGSTSMVSNFGVPAGSNSTSANLSLSSLPIGKRGEAGGTVVDLASIYNSEGPNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGSPSSQTTSLNNNNNGAAAMMLGSNTTPATDFTSMTHSPNGFDQLVMQTNAQLQSEPMKLKLRSSAVEHNLTRDFLGVSGGGGGGGGGGGGGPQFLPQELAKFASMGSPMGLSHFTGNQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01041 526 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vimu3g01041 526 Gene3D Classic Zinc Finger 42 116 - -
Vimu3g01041 526 Gene3D Classic Zinc Finger 119 197 - -
Vimu3g01041 526 MobiDBLite consensus disorder prediction 395 414 - -
Vimu3g01041 526 SMART c2h2final6 64 86 IPR013087 -
Vimu3g01041 526 SMART c2h2final6 140 160 IPR013087 -
Vimu3g01041 526 SMART c2h2final6 105 135 IPR013087 -
Vimu3g01041 526 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Vimu3g01041 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Vimu3g01041 526 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Vimu3g01041 526 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Vimu3g01041 526 MobiDBLite consensus disorder prediction 484 504 - -
Vimu3g01041 526 FunFam protein indeterminate-domain 12-like 43 111 - -
Vimu3g01041 526 MobiDBLite consensus disorder prediction 1 48 - -
Vimu3g01041 526 MobiDBLite consensus disorder prediction 1 25 - -
Vimu3g01041 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 500 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01041 Vimu-Chr3 13647553 13649474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01041 1 260 IDZ Gene Family AT5G03150 63.287 3.38e-121 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g01041 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01041 K25870 - gmx:100801182 769.229