Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01038 ATGAAACATGTCTGCTTCAAGCTTACACCACAACCTGTCTCCATGGTTTCACCTATCTTTCCTGCGAAACCAACATTTGTTGCAATTTCAACTGTTCTGCTCAAACCTGTATTGTTTATTTGTCTCTTTGGTTTGGTGGGTTCCCCACTGAACATGGCAACTGAAGCTGCAGACTCTTCCAACCACAAAAATAACCAAGGCCATGGCACCACTGGAAGTAGAACTGATACCCCAATTCAAAAGGGTCCAGCATCATCTGAAATAACAGAGGAATTCACAAGAGATCAACGTGGGACAAGGCAAAACCTTATCGTGGATATACCTGCAATATCTCAGGAGGAACCAAAAGAAGATTATGTGAGGATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGATTTTTTCCCCTTGTCCAAGTCCTGTTTATCCAAGAAGCAAAGAATCCCCAGGTCCGTCCTCATCAAAAAGTAGATCAAATATTAAAGCCTTTCTTCCTAAACTCAGTTTTAAATTTCGCAACACAAGCTCGGAGATTGAAAAGGCTGCTTTCCTAGCACTTGGAGGATCAGCAACCGTGGCACCAAAAAGGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAGAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCTGGGTCTGTACACGGCGGGAACATGGCTTATGCAGAAACAGTTGAGAATGAAATGAAATTACCAATTCATCGTTCTCGTTCAGTACCTATGCTAAACAAAGAAGGTAGCTCACCCGTACCTGGCATGTTTCGTATAGTTCCGACCACATTACGAGTGGATGATAAAATTTCCGCAACACCTATGACATCTCCAATTCATGATACTGTTCACAATGAGGATGGTGGTGAAGATATTCCGGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTTGGAGAAGGTACTGATACTTTTAAATTGGAGTGTAGCTGCAAAGGTGAGCTGTCATTGGCACACAAAGAATGTGCAGTGAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAGGTTCAGAACCTACCTGTCACTCTTTTACGAGTTCAAAACGGTCAGGCCCATAACATACTGGGGTCAGACGCTTCTCAATACAGGGTTTGGCAGGATGCTCCCGTTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCCGGTTCTATTGCCATGTCTCTCCCATTTTCTTGTATATTGGGTCTTCTTGCAAGCATGACAGCAACAACAATGGTGAGGAGAAATCATGTTTGGATTTATGCAACTGTTCAGTTTTGTCTGGTGGTTCTTTCTGGGCATCTTTTCTTTTCATTGATTCATATGCAAGCTGTTCTTGCTATCCTACTAGCTACACTTACTGGGTTTGGAGTTGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTAAAGTGGAGGAGGAGATCCCTTGCTCAGTCAAATCAACAGCAAGGTTCCCAAGATGCAGTGCCACCAGATCAATCATCTACAGTTGCTCATCAATCTCAGACTGGTTCTGAACAAACTGAAAGCAATTTGGGAGAGTCTTCTCATCAGAGGAGTTGA 1662 0.423 MKHVCFKLTPQPVSMVSPIFPAKPTFVAISTVLLKPVLFICLFGLVGSPLNMATEAADSSNHKNNQGHGTTGSRTDTPIQKGPASSEITEEFTRDQRGTRQNLIVDIPAISQEEPKEDYVRINMPLTPPPRRVIFSPCPSPVYPRSKESPGPSSSKSRSNIKAFLPKLSFKFRNTSSEIEKAAFLALGGSATVAPKRPFLSRTLSLVTPRGKRTSSLPVTPIAHSNPGSVHGGNMAYAETVENEMKLPIHRSRSVPMLNKEGSSPVPGMFRIVPTTLRVDDKISATPMTSPIHDTVHNEDGGEDIPEEEAVCRICMVELGEGTDTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGQAHNILGSDASQYRVWQDAPVLVVINMLAYFCFLEQLLVSNMGSGSIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFCLVVLSGHLFFSLIHMQAVLAILLATLTGFGVVMCGASILMEILKWRRRSLAQSNQQQGSQDAVPPDQSSTVAHQSQTGSEQTESNLGESSHQRS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01038 553 SUPERFAMILY RING/U-box 308 363 - -
Vimu3g01038 553 PANTHER OS02G0165000 PROTEIN 62 523 - -
Vimu3g01038 553 MobiDBLite consensus disorder prediction 131 159 - -
Vimu3g01038 553 MobiDBLite consensus disorder prediction 512 553 - -
Vimu3g01038 553 MobiDBLite consensus disorder prediction 57 87 - -
Vimu3g01038 553 MobiDBLite consensus disorder prediction 57 108 - -
Vimu3g01038 553 CDD RING_CH-C4HC3_MARCH 312 360 - -
Vimu3g01038 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 367 IPR013083 -
Vimu3g01038 553 Pfam RING-variant domain 312 359 IPR011016 GO:0008270
Vimu3g01038 553 ProSiteProfiles Zinc finger RING-CH-type profile. 304 366 IPR011016 GO:0008270
Vimu3g01038 553 SMART ringv_2 311 360 IPR011016 GO:0008270
Vimu3g01038 553 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01038 Vimu-Chr3 13582144 13587141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01038 309 384 C3H Transcription Factor Family AT2G37950 37.662 3.42e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01038 - - gmx:100787963 862.448