Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu3g01034 | ATGGGTAACATAGGAAGTAGCGGCTCCAACAGCCGTCGGAGACACGGCGGTGGCGGCAGCGGGAGAAGGATTCACCCGCCGCCTCCTCATCCGCCGGTGATTCCTCCGCCGGAAGTCACGGCGAACCGATTCGCGTACCCTCCCGCCGCCACTCCGTATCACAACTACCCCGGGTACTACCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCTCCTTACGACCACCACCACCGTCCGTCGGTGGACCCGATGTGGGGGAGGTACCCGGCTGCGCCGGCTCCGGCGCCGACGCCGTATGTTGAGCACCAGAAGGCTGTTACTATAAAAAACGATGTCAACATCAAGAAGGAGACTCTTAGGATTGAGCCTGATGAAGAGAATCCTGGCCGTTTCCTCGTGACGTTTACGTTTGATGCCACTGTTTCGGGAAGCATCACGATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCATCCTAACCCCAATGAAGGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGTCTAGGCCAGAGGTTTAAACAACCAGCTGGAACTGGTATTGATTTTTCGATATTTGAGGAGTCTGAGTTATTGAATGTGGGGGATGACGATATCTATCCTATTGCAATTAAAGCAGATGCATCCACTGGTGACCCTGATGAATCAAAATCAAATGAAACTCCGTCATATGGTAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTTCAGGTGAAGGTTGTTAAACAGATTTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGGTAATTCAGTGGAGAGTGACTTGGATGGTAATGACCCAGGAAAAGAGTGTGTTATATGTTTGTCAGAGCCTCGTGACACAACCGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAAACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAAACTGAGGAATGA | 1053 | 0.5005 | MGNIGSSGSNSRRRHGGGGSGRRIHPPPPHPPVIPPPEVTANRFAYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPSVDPMWGRYPAAPAPAPTPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGRFLVTFTFDATVSGSITILFFAKEGEGCILTPMKENVLPPVTVNFQQGLGQRFKQPAGTGIDFSIFEESELLNVGDDDIYPIAIKADASTGDPDESKSNETPSYGNTNSQITQAVFEKEKGEFQVKVVKQILWVNEMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPETEE | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu3g01034 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 343 | IPR013083 | - | |
| Vimu3g01034 | 350 | PANTHER | MAHOGUNIN | 1 | 343 | IPR045194 | GO:0061630 | |
| Vimu3g01034 | 350 | MobiDBLite | consensus disorder prediction | 24 | 42 | - | - | |
| Vimu3g01034 | 350 | SUPERFAMILY | RING/U-box | 293 | 338 | - | - | |
| Vimu3g01034 | 350 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 278 | 343 | - | - | |
| Vimu3g01034 | 350 | Pfam | Zinc finger, C3HC4 type (RING finger) | 292 | 338 | - | - | |
| Vimu3g01034 | 350 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Vimu3g01034 | 350 | SMART | ring_2 | 294 | 332 | IPR001841 | - | |
| Vimu3g01034 | 350 | ProSiteProfiles | Zinc finger RING-type profile. | 294 | 333 | IPR001841 | - | |
| Vimu3g01034 | 350 | MobiDBLite | consensus disorder prediction | 216 | 238 | - | - | |
| Vimu3g01034 | 350 | CDD | mRING-HC-C3HC5_MGRN1-like | 292 | 333 | IPR045195 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu3g01034 | Vimu-Chr3 | 13483147 | 13486794 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu3g01034 | 87 | 313 | C3H Transcription Factor Family | AT3G09770 | 64.957 | 6.81e-103 | 305 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu3g01034 | - | - | gmx:100789032 | 562.377 |