Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01033 ATGGTCTTTCTCCTTTTCTCCACACGCTCTTCTTCTTCTTCTCCTAAAACCTTCATATATAACCCCAAACCCCAATATCAAGGGAGTGTTACACTTATCCCAAGACAAGACATGAAGATTCCTTTTTTCACTTGTTTCTCTTCACCCACCAAAGAACAAAACAAAAGCGACTACCCAGAGGAAGAGATCAATGATGGGAGCTTCCGTTTGTTCACATATAGCGAATTGAAATTGGCCACGCGAAATTTCCATTCCTCGGAGAAGGTTGGAGAAGGTGGCTTTGGTTCTGTCTATAAGGGGAGGCTTCTGGATGGTTCTCTTGTGGCGGTGAAGGTGCTTTCGGTTGAGGTGGAATCCATGCGAGGAGAGAGGGAATTTGTGGCGGAATTGGCTACACTTGCAAACATCAAGCACCAAAATCTTGTAAGCTTGAAAGGGTGTTGCGTGGAAGGTGTTCATAGGTATTTGGTGTATGATTATATGGAGAACAACAGCCTCTACAAAACTTTCTTAGGTATGATTAATTTCTGTTATGTGTTTCTGAGTTTCCAATTTAGGGGTTGCAGTTGGAGGCCGAAGGGTTATCTAGCTCCAGAATATGCCAATTCCGGACAGGTTTCAAGAAAATCCGATGTTTACAGCTTCGGAGTGTTACTTCTGCAAATCGTGAGTGGCCTAGCAGTGGTGGATGCGTATCAAGACATTGAACGTTTCATAGTGGAAAAGGCGTGGGCAGCTTATCAATCTAACGATCTGTTAAAACTGGTGGATCCCATGTTGAACAAGAATTTTCCCGAGGAGGAGGCCATAAAGTTCTTGAAGGTGGGGCTACTTTGTGTGCAAGAAGCAGCGAAGCTTCGGCCACGAATGTCAGAGGTGGTCGAGAAGTTCACCAACAACGTTGATATGAAAGATGTTAAGATTTCGAAACCAGGGTTCGTTGCTGATCTGAGGAACATCAGAATCAGAAACCAAAACTCGTCCCCGGAAACAAGTTCTGCTGGAGCAACCTTCGCAAGCTCCATTTGGAGTTCAGCCAATCTTGCTCGTTAG 1053 0.4463 MVFLLFSTRSSSSSPKTFIYNPKPQYQGSVTLIPRQDMKIPFFTCFSSPTKEQNKSDYPEEEINDGSFRLFTYSELKLATRNFHSSEKVGEGGFGSVYKGRLLDGSLVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGVHRYLVYDYMENNSLYKTFLGMINFCYVFLSFQFRGCSWRPKGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWAAYQSNDLLKLVDPMLNKNFPEEEAIKFLKVGLLCVQEAAKLRPRMSEVVEKFTNNVDMKDVKISKPGFVADLRNIRIRNQNSSPETSSAGATFASSIWSSANLAR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01033 350 ProSitePatterns Protein kinases ATP-binding region signature. 89 111 IPR017441 GO:0005524
Vimu3g01033 350 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 194 341 - -
Vimu3g01033 350 ProSiteProfiles Protein kinase domain profile. 83 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01033 350 Pfam Protein kinase domain 83 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01033 350 SUPERFAMILY Protein kinase-like (PK-like) 67 318 IPR011009 -
Vimu3g01033 350 Pfam Protein tyrosine and serine/threonine kinase 192 297 IPR001245 GO:0004672|GO:0006468
Vimu3g01033 350 Gene3D Phosphorylase Kinase; domain 1 52 160 - -
Vimu3g01033 350 FunFam Serine/threonine-protein kinase receptor 52 160 - -
Vimu3g01033 350 Gene3D Transferase(Phosphotransferase) domain 1 161 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01033 Vimu-Chr3 13372222 13374060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01033 43 330 Receptor kinase-like Gene Family AT4G23190 30.000 2.84e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g01033 PK_Tyr_Ser-Thr 6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01033 - - egt:105961224 281.182