Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01032 ATGGCTACAGCTGTTGATTTTATATTTACTAATATTGATCATTTCATGGTTACTACAGAAGAATTAAACTCAGAATTAAAGCAAGGGCAAGATGATGGATTGGATCAAATGTCAGAGCAGCAAGAGGGTGAAGAAAATCACCCGGAGGCGGGTGAGAATTTTCAAAACCTTGGAACTCTAAGTGAGAGCTTCAACTATGAAATTCCATGTATTGAAGTTGATCCAAGTAATGAAGCAGCATTTAATTATGTGACAAAGGTTTTAGATCTCTCAGGGTTCACTGGCCAGGATTCCCTAGGGATATGGTATTCTGATAACCAACCAGTTGGTCTTTCAATATATGAAGAATTGGAGGATAGCTTGCTTCTTGATCCTGATTGTTCTGGTAACAGTGGCGAAGGTGGAGAATGTAATCACCTGCTTCTGTTCGATATAGTAAATGAAGCGTTGATGGAGATTTTTGGAAGATCATACAACTATTATCCAAGACCCTTGTCTACTCTCTCCCATGTTCATCCACTGCCAACAGGAGAAAATGTGCTCTATGATGTGTGGAAGCTTATTAGCTGGTATCTGAACTCAACAATATCTGACACTTACATATCATTGGATTATTATGTGAGCAAAGATCTATCAAAATATGATGGGTGGATGAATCTTCAATTTGATTCTGAATGTGTGGGGCTTGAGCTAGATGACTTGATTTTTGATGATCTTTTGGAGGAAATAATATTCACCCAGTTTACCTAA 750 0.38 MATAVDFIFTNIDHFMVTTEELNSELKQGQDDGLDQMSEQQEGEENHPEAGENFQNLGTLSESFNYEIPCIEVDPSNEAAFNYVTKVLDLSGFTGQDSLGIWYSDNQPVGLSIYEELEDSLLLDPDCSGNSGEGGECNHLLLFDIVNEALMEIFGRSYNYYPRPLSTLSHVHPLPTGENVLYDVWKLISWYLNSTISDTYISLDYYVSKDLSKYDGWMNLQFDSECVGLELDDLIFDDLLEEIIFTQFT 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01032 249 PANTHER PROTEIN TRM32 27 246 IPR044257 -
Vimu3g01032 249 Pfam Domain of unknown function (DUF4378) 81 242 IPR025486 -
Vimu3g01032 249 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01032 Vimu-Chr3 13285249 13285998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01032 59 236 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 48.352 3.99e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01032 - - var:108319201 445.277