Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01021 ATGGCGGAAGAACACCGATGCGAGACTCCGGAAGGTCACCGTCTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCTCCGCTACCATGAACCTCTGCTCCAAATGCTATGGCGCGATCCGTTTGAAGGAGCAGGACGCGTCGACCAAATCCACGATCGAAACCGCGCTCACTTCCTCCGCGAAGACGCCGCTGTCCACGGCGCCCCCGGCGGCGATTGATGTCCTTCTCCAAGCATCGTCTCCGCTTCCGGCAGAAGCTGCGGTCGAAGTTCCGGTTCAGGTCGCGGTTCCGGTTCAGATCGCGGTGGTGACGAGCTCTACATCCTCGGGTTCAGCGCAACCGAACCGGTGCGCCGCGTGTCGGAAGCGTGTGGGGTTGACTGGGTTCAAGTGTAGGTGCGGAGTCACGTTTTGCGGGACCCACAGGTATCCGGAGAAGCACGCGTGCGGGTTCGACTTTAAGACGGTGGGGCGAGAGGAGATCGCTCGGGCTAACCCCGTGATCAAAGCAGAGAAGCTGCGGAGGATATGA 531 0.6102 MAEEHRCETPEGHRLCANNCGFFGSSATMNLCSKCYGAIRLKEQDASTKSTIETALTSSAKTPLSTAPPAAIDVLLQASSPLPAEAAVEVPVQVAVPVQIAVVTSSTSSGSAQPNRCAACRKRVGLTGFKCRCGVTFCGTHRYPEKHACGFDFKTVGREEIARANPVIKAEKLRRI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01021 176 Gene3D - 97 172 IPR035896 -
Vimu3g01021 176 SMART AN1_Zf_4 117 154 IPR000058 GO:0008270
Vimu3g01021 176 Gene3D - 1 62 - -
Vimu3g01021 176 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vimu3g01021 176 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Vimu3g01021 176 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 176 - -
Vimu3g01021 176 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 55 - -
Vimu3g01021 176 ProSiteProfiles Zinc finger AN1-type profile. 111 157 IPR000058 GO:0008270
Vimu3g01021 176 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vimu3g01021 176 SUPERFAMILY AN1-like Zinc finger 107 171 IPR035896 -
Vimu3g01021 176 Pfam AN1-like Zinc finger 117 153 IPR000058 GO:0008270
Vimu3g01021 176 FunFam Zinc finger AN1-type containing 6 93 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01021 Vimu-Chr3 12890077 12892260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01021 1 176 C2H2 Transcription Factor Family AT3G52800 52.778 1.10e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01021 - - gmx:100788323 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02356 6 20578991 20579497 Vimu3g01021 3 12890077 12892260 PCT