Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01007 ATGGAGCAATTGCTGGAGAACCAGAGCGAAGCAAAACGATTGGTGCCGCACAAGGCATTCACGTGGATGAGGATGACGAGAGGGCACATGATCTTTAGATCACTTGTCCTATATCTGGCTTTTATGGTGGCAAATTCAACAGCTCTTGCGGATCAACAGACATGTATAGCTCACATTGACAAGACTAAGATTAGAGCCTCAATTCATTCTCAAGACAGCTCAAGCCATGCTTCAATGCAAGAAGACGGAGAAGAAGAGATTTTAGCCCCTCAACTCCTTTATGCCTATGAAACCAGCATGTTTTATTTTGCTGCCCATCTTTCCTCAAATTGCAACAAGAAGCTTATTGGTGCAAGAGCCTATTTCAAGGGATATGAAAAATATTTTGGAAAAAAAATCAATGAAACAGTGGATTACCTTTCTCCAAGAGATTCTCAGGCTCATGGAACACACACTACCTCAACTGCAGCAGGTGATATGGTGAAAAATGCCAACTTTCTTGGCCAGGCTAGAGGTACAGCAACTGGAATGAGTAGAGGTCAAGCTCCCACTCCTAGTTATCGACCATACTTAAGCCAACCTTCCTATGCGGCTAATTCCTCGTTTGCTCATCAAACTAGGCCACGACAACAACAAGGGTATTATCCACCGCAACGCATTTCGACTGAAGCTTGGAGGGCTGGAGCGAACGCGAGCCCAAATCTGAATGCGAGTCAAAATACCAACCCAAGGAGGAATCAGTTTGTTAACTTTACCCCTATCCCTATGACGTACACGGAGTTGTTACCTAACCTGGTCGAAAAGGGTTTGGTCGCCATTTGCCCGATGAAGCCTGTACAACCTCCATACCCTAGGGGTTATGATGCAAATGCCAAGTGTAGTTATCATGGGGGAGGCGTTGGTCACTCGACCGAGGGATGTATGACTTTCAAATATAAAATACAAGCTCTAATCGACTCCAAGTGGTTACAGTTTCAAGAAGATAAGCCTAGCGTCAAGGTTAACCCACTTTCTAGGCATGAGAGAGCCTCAATGAATGTTGTTGAGGTGAAAGAGCATGAGTTGGTAAAGGATGCTTTGTTGAAGGTGGGTCTAGTGAAAGGTGATTACGATATAGGTATAACATGCGTATTTCACCCAACTGTCGGGCACTCTATTGAGGAGTGTGTTGAATTTAAAGAGTTTATGCAAGACTTGCTCGATAGAAGTTTGATGCAAGTGTGCTATGAAGGCAAGAAAGGGTTGAGTGAAGAAAGGATTGAGCGCAGAACCCAAAATGGGAAGAGGATTCGTATTTATGACATCAAGAAGAGATTTCACAGAGATGGACGGGTCAGCACTGGCCAAATAGCAGTTGTGGAGGATGAAGATGGATCCGAAGGCTCAAGTTTCGTATTAGTGAAGCAAGAGTCTAAAGAGATAAAACCCCATCAAGAAGAGCGGGCATTAATGGAGACCCAATTAGAGGAAGCTGAGTGGGTTCAAGCCCGTTTCGACCAACTCATCTCGCTGAGAAAAAGAGGTTAA 1527 0.444 MEQLLENQSEAKRLVPHKAFTWMRMTRGHMIFRSLVLYLAFMVANSTALADQQTCIAHIDKTKIRASIHSQDSSSHASMQEDGEEEILAPQLLYAYETSMFYFAAHLSSNCNKKLIGARAYFKGYEKYFGKKINETVDYLSPRDSQAHGTHTTSTAAGDMVKNANFLGQARGTATGMSRGQAPTPSYRPYLSQPSYAANSSFAHQTRPRQQQGYYPPQRISTEAWRAGANASPNLNASQNTNPRRNQFVNFTPIPMTYTELLPNLVEKGLVAICPMKPVQPPYPRGYDANAKCSYHGGGVGHSTEGCMTFKYKIQALIDSKWLQFQEDKPSVKVNPLSRHERASMNVVEVKEHELVKDALLKVGLVKGDYDIGITCVFHPTVGHSIEECVEFKEFMQDLLDRSLMQVCYEGKKGLSEERIERRTQNGKRIRIYDIKKRFHRDGRVSTGQIAVVEDEDGSEGSSFVLVKQESKEIKPHQEERALMETQLEEAEWVQARFDQLISLRKRG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01007 508 Gene3D Peptidase S8/S53 domain 108 178 IPR036852 GO:0004252|GO:0006508
Vimu3g01007 508 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 157 419 - -
Vimu3g01007 508 SUPERFAMILY Subtilisin-like 120 174 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01007 Vimu-Chr3 12483746 12489605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01007 108 177 Subtilisin-like Serine Gene Family AT1G01900 65.714 3.12e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01007 - - vra:106770371 379.407