Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00978 ATGATGAACTCACACAACCAACAACTTTCCCTCTTATCTCTTTCTCTAGCACTTCTACTTCTCTCAGGTTTGAGAGTTGAGGCTAGATTGCAACATCATGCGACGAAATACCAAAAGTTGTTTGTTTTTGGCGACTCCTATGTGGATACCGGAAACACGAGAATAGATCAACCTGGGTCCTGGAAAAACCCTTACGGCATAACTTTCCCCGGAAAACCTGCCGGAAGATTCTCGGACGGTAGAGTTCTAACAGACTACATTGCTAAGTTTTTGGGACTGAAATCGCCTCTTCCCTACAAATTTAGGAAATTCATTCCACAAAATTTGAAATACGGGATGAACTTTGCATATGGTGGTACTGGTGTGTTTGACACATCCTCCAAAAACCCAAACATGACAATCCAAATCGATTTCTTCAAGCAGTTGATCAAAGAGAATGTGTACACAGCTTCAGATCTCAGCAAATCTGTTGCACTTGTCTCTGTCGCAGGAAATGATTACAATTTCTATTTGGCAAGAAATGGCTCTATTCAGGGTTTTCCCTCTTTCATCGCCTCAGTGGTTAATCAAACTGCAATCAACTTGCTTCGCATCCAAAGTCTGGGAGTGAAGAAAATTGTTGTGGATGGTCTACAGCCACTTGGATGTCTTCCTGGAAGCACAGCCTCGTTATCATTCCAAAAATGTAACAGTACCTTCAATGACCTCGTACTGCTCCACAACAACTTATTGAACCAAGCTGTGACTAAGTTGAATGAACAAACCAAGAACAAAACAACATTCATCGTTCTTGATCTTTACGACAGTTTCTTGTCGGTGCTGAACCACCCATCTAGCAATAACATCAAGGACGCATTCAAGCCTTGTTGCGTTGGTATAAGTAGCCAATATTCATGTGGAAGTGTGGACGAAAACAATGTTAAGAAATATAAGGTCTGTGATCATCCCAAATCAGCGTTCTTTTGGGACCTTTTGCATCCCACTCAAGCTGGTTGGCTTGCCGTGTACAACGAGTTGCAAACCACAAAGGCTCTTCAACAAATCCGATACTGA 1053 0.4207 MMNSHNQQLSLLSLSLALLLLSGLRVEARLQHHATKYQKLFVFGDSYVDTGNTRIDQPGSWKNPYGITFPGKPAGRFSDGRVLTDYIAKFLGLKSPLPYKFRKFIPQNLKYGMNFAYGGTGVFDTSSKNPNMTIQIDFFKQLIKENVYTASDLSKSVALVSVAGNDYNFYLARNGSIQGFPSFIASVVNQTAINLLRIQSLGVKKIVVDGLQPLGCLPGSTASLSFQKCNSTFNDLVLLHNNLLNQAVTKLNEQTKNKTTFIVLDLYDSFLSVLNHPSSNNIKDAFKPCCVGISSQYSCGSVDENNVKKYKVCDHPKSAFFWDLLHPTQAGWLAVYNELQTTKALQQIRY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00978 350 PANTHER OSJNBB0059K02.9 PROTEIN 13 348 - -
Vimu3g00978 350 Gene3D SGNH hydrolase 26 347 IPR036514 -
Vimu3g00978 350 Pfam GDSL-like Lipase/Acylhydrolase 40 336 IPR001087 GO:0016788
Vimu3g00978 350 SUPERFAMILY SGNH hydrolase 38 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00978 Vimu-Chr3 12074684 12077921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00978 18 335 Pollen Coat Proteome AT1G75930 28.319 4.30e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00978 - - gmx:100800932 532.717