Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00952 ATGGAGACCATTGGTTCTGTGGATGACCTCTTGGACTTTTCGTTGGACATAGGTGAGGAAGATGATGACGAAGACAAACACAGGAAATCCTGTCCTTCACTTAACTCAAAATGTGGCAACCCATCATTGTTTAACTCATTGGTACCAGATGATCCAAACCATTCATATTCTGACAAGATAGTACTGCAAAAGGAGGGTATTGATGGGGCCCGAAGAGTAAATGGGCCCGGTGAGCCTCTAGACCATGAAGAGTTTGTCGAAGAGGAGCTTGAATGGCTATCAAACAAAGATGCATTTCCTTCTGTTGAAACATTTGTTGACCTATCATGTATTCAACCTGATACAGCCAAGATTAAAAAATCAACCCCAGTACTTGAGGACAGCACAGGCAGTAGCAACAGTAATAACAGCAGTAACAGTATTTCCCTCCTAAGCAGTTGTGATCACCTTAAGGTCCCAGTCCGTGCACGAAGCAAGAGACGCAGTAGGTGTCGCCCTGGCATTGCAGACGAAAACTCTGGTCAGCAAGTCTGGTGGAGACAACCAAGTAATGAAATTTCCAAGGCAGAAGAAGGGATGAAAATCTCACCAATTGGGAGGAAATGTCAGCACTGTGGAGCTGAAAAAACTCCACAGTGGCGGGCAGGTCCCCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGTCGGCTTGTGCCTGAATACCGTCCTGCTAGTAGCCCAACTTTTCGTAGTGATTTGCATTCTAATTCCCACAGGAAGATAGTAGAGATGAGGAAGCAGAAGCAAATGGGAATGGGATAA 819 0.453 METIGSVDDLLDFSLDIGEEDDDEDKHRKSCPSLNSKCGNPSLFNSLVPDDPNHSYSDKIVLQKEGIDGARRVNGPGEPLDHEEFVEEELEWLSNKDAFPSVETFVDLSCIQPDTAKIKKSTPVLEDSTGSSNSNNSSNSISLLSSCDHLKVPVRARSKRRSRCRPGIADENSGQQVWWRQPSNEISKAEEGMKISPIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSDLHSNSHRKIVEMRKQKQMGMG 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00952 272 PANTHER GATA TRANSCRIPTION FACTOR 7 268 - -
Vimu3g00952 272 MobiDBLite consensus disorder prediction 120 140 - -
Vimu3g00952 272 FunFam GATA transcription factor 191 271 - -
Vimu3g00952 272 ProSitePatterns GATA-type zinc finger domain. 202 227 IPR000679 GO:0006355|GO:0043565
Vimu3g00952 272 CDD ZnF_GATA 201 249 IPR000679 GO:0006355|GO:0043565
Vimu3g00952 272 Gene3D - 198 269 IPR013088 GO:0006355|GO:0008270
Vimu3g00952 272 ProSiteProfiles GATA-type zinc finger domain profile. 196 232 IPR000679 GO:0006355|GO:0043565
Vimu3g00952 272 MobiDBLite consensus disorder prediction 122 140 - -
Vimu3g00952 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 259 - -
Vimu3g00952 272 SMART GATA_3 196 246 IPR000679 GO:0006355|GO:0043565
Vimu3g00952 272 Pfam GATA zinc finger 202 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00952 Vimu-Chr3 11683814 11690919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00952 87 272 C2C2-Gata Transcription Factor Family AT3G24050 49.528 5.23e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu3g00952 GATA 9.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00952 - - gmx:100784527 388.267