Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00935 ATGGATTCTGCTCCCAATCTTTCTTCCCATTCTCAAAACCACACCTCCACTCCGCACTTCCGTGTTAAGGGCTTTCTAGTCTACACTCGCCGCAAGCGTTCTCTTCATTCCGCCAATGATGCAGTCAAAAGACTCAAAACTGAAGAAATTAAAACCGAAGAATCTCATGATGAGGACTCTGTTTTCAAGCTCCCCAAAATGGAGTCTCGAGAGGACCCCAATTCTGCCGAGGAATTAACCAAGACTGAATTGAATACTCCACAGAAGAAGATTGTGGTGGTCAGTAAGAAACCCGTCACCGTCAAGGAGCTCTTTGAAACTGGTTTGCTAGAGGGCGTTCCGGTCGTTTACGTCGGTTGCAAGAAGGATTCAACTTCGGAATTGAAAGGTGTAATTACTGATGGTGGAATCTTGTGCTCGTGCCGTCTGTGCAATGGATGTAGGGTTATTCCACCTTCCCAATTTGAGATTCATGCATGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGGAAGAGCCTGCTTGAACTATTGAGAGCATGCAGGGCAGCCCCACTACATACTTTGGAGACGACCATTCAAAATTTTGTTAGTTCTCCACCTGAGGAAAAATATTTTACTTGCAAAAGTTGCAGAGGATGTTTTCCTGCTTCCAATGTGGAAAGAGTTGGCCTTTTGTGTCTATCATGTGTGGAATCAAGAAAATCTGAAAGCAGTTCTATTCATGCTGTAGGCAAAAGAGTCAGAAGAGATCATCAGAGGAAGCTGTTTTGGAATCGAAAGGTAGAGTTAACCTTGTTTGGGATTATGGGATGTGGGGTGTGTCCCCTCGGCCAGTATTATTCTCCCGGTCATGTTCTTGTTGTAGTTCTGAACTATGTATTTCTCCTCAAACTAAGAGACACTGGAAGACAAGAACAAAGTTGGTATCAGCGAATACATAAATTGATTTTTGAAGAGGATGGATTGCCTAATGGGGCTGAAGTAGCTTATTATGCACGTGGACAGAAACTGCTTGAGGGTATCAAAACACGCTATGGAATTGTCTGTCGATGCTGCAACACTGAGGCATATTTTCTTGTCTTATCAGCCCCTCACAGTTTGAAGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCGTGAGTTTTGTTCTTGTCATGTTCCAGGAAGGGGTTATGTTTTGAATTTTATATTCTGTGGGATGAATATTCACAGTTATGCATACATCTACACATCGAATGGGGTGTCACTCCATGAGTTAGCTATATTTCTTTCGAAAGATCACAAATGCACTACAAAGCAGAATGATTATGCATGTGTAGTTTGTTGGGATGGTGGAAACCTGTTGCTCTGTGATGGATGTCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGCATTCCCCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACGTTTCTCAGAGAAAGGCCTGTGTTATACAATGCTGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCCATTGAGGAGATTGCCAAGAGATGCATTCGCATAGTAAAAGACATAGGAGCTGAGATTGGTGGATGTGTTTTATGCAGGAGTTCTGATTTCAGCAGATCAGGATTTGGTCCTCGTACAATTATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGTTGCTTGCGGGATCGTAAGATGGCATTTCTGAAGGAGTTGCCAGAAGGGGATTGGCTTTGTTGCAACGATTGCACCAGAATACATACTACTTTGGAGAATCTCCTGGTTACGGGGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCATGTAGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTAAGATGGAAACTTCTTAATGGAAAAGTTGCGTCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGGCCATGTTTAATGAATGCTTTGATCCTATAGTTGATCCAGCTGCTGGACGTGACCTCATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAAGATTTTGGAGGAATGTATTGTGCATTATTGATCGTCAATTCATCGGTGGTATCTGCGGGCATGCTTCGAATTTTTGGTGAGGACATTGCCGAACTCCCCATAGTTGCAACGAGATATAAGAACCGTGGGAAGGGCTACTTCCAAACACTTTTCTCGTGCATTGAGAGGCTGCTGGCTTTCTTGAAAGTGAAAAATCTTGTGCTACCGGCTGCTGAAGAAGCAGAATCTATATGGACAGAAAAATTCGGATTTAGCAAGATGAAACCTGATGAGGTATGTTTCCTCAACTACATACAGGCTAGGAGCTAA 2358 0.4317 MDSAPNLSSHSQNHTSTPHFRVKGFLVYTRRKRSLHSANDAVKRLKTEEIKTEESHDEDSVFKLPKMESREDPNSAEELTKTELNTPQKKIVVVSKKPVTVKELFETGLLEGVPVVYVGCKKDSTSELKGVITDGGILCSCRLCNGCRVIPPSQFEIHACNIYKRAAQYICLENGKSLLELLRACRAAPLHTLETTIQNFVSSPPEEKYFTCKSCRGCFPASNVERVGLLCLSCVESRKSESSSIHAVGKRVRRDHQRKLFWNRKVELTLFGIMGCGVCPLGQYYSPGHVLVVVLNYVFLLKLRDTGRQEQSWYQRIHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRYGIVCRCCNTEAYFLVLSAPHSLKSMQAGLLAGNREFCSCHVPGRGYVLNFIFCGMNIHSYAYIYTSNGVSLHELAIFLSKDHKCTTKQNDYACVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLYNADAVAAGRVEGVDPIEEIAKRCIRIVKDIGAEIGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDRKMAFLKELPEGDWLCCNDCTRIHTTLENLLVTGAERLPESLLDVIKKKHVERCLEPLNEIDVRWKLLNGKVASPETRPLLLEAVAMFNECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMLRIFGEDIAELPIVATRYKNRGKGYFQTLFSCIERLLAFLKVKNLVLPAAEEAESIWTEKFGFSKMKPDEVCFLNYIQARS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00935 785 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 527 589 - -
Vimu3g00935 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 504 IPR013083 -
Vimu3g00935 785 SUPERFAMILY FYVE/PHD zinc finger 525 585 IPR011011 -
Vimu3g00935 785 ProSiteProfiles Zinc finger PHD-type profile. 440 485 IPR019787 -
Vimu3g00935 785 SMART PHD_3 442 483 IPR001965 -
Vimu3g00935 785 SMART PHD_3 530 587 IPR001965 -
Vimu3g00935 785 SUPERFAMILY FYVE/PHD zinc finger 438 486 IPR011011 -
Vimu3g00935 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 589 IPR013083 -
Vimu3g00935 785 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 429 506 - -
Vimu3g00935 785 PANTHER AUTOIMMUNE REGULATOR 36 774 - -
Vimu3g00935 785 ProSitePatterns Zinc finger PHD-type signature. 443 482 IPR019786 -
Vimu3g00935 785 MobiDBLite consensus disorder prediction 50 78 - -
Vimu3g00935 785 Pfam Tify domain binding domain 130 185 IPR032308 -
Vimu3g00935 785 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 681 773 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00935 Vimu-Chr3 11368997 11378988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00935 90 775 PHD Transcription Factor Family AT2G36720 45.703 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00935 - - gmx:100798276 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00935 3 11368997 11378988 Vimu3g00935 3 11368997 11378988 ECH