Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00922 ATGACTAAACCTACAACTACTACCCCCAACGGATATCTGACGACAATGCCATCTTCCGTGACGAGTTTAACCCCCTCGCCGCTCTCCACAGTCATCCCAAATCCAGCAAGGCCTTCGTTGTCGACCTTGCGTCCCTCGTCTGGAGAGCCTCCGCATCTTCTTCAATCCCTAGTTCGTGGTGCTAGGGAAAAGCGTCTCAGGGTCAAGGGACCTGTTAGAGTGCCAACCAATGTTCTTCACATCGTCACCAGGAAATCCCCGTGCGGTGAAGGTATTTTTCCTCACTTTCTCGCTTTTGTTGCTGCTCCACTTCAATTATTTCTGTAA 327 0.5046 MTKPTTTTPNGYLTTMPSSVTSLTPSPLSTVIPNPARPSLSTLRPSSGEPPHLLQSLVRGAREKRLRVKGPVRVPTNVLHIVTRKSPCGEGIFPHFLAFVAAPLQLFL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00922 108 Gene3D Ribosomal protein S10 domain 51 96 IPR036838 -
Vimu3g00922 108 SUPERFAMILY Ribosomal protein S10 54 91 IPR036838 -
Vimu3g00922 108 ProSitePatterns Ribosomal protein S10 signature. 61 76 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu3g00922 108 Pfam Ribosomal protein S10p/S20e 55 90 IPR027486 -
Vimu3g00922 108 MobiDBLite consensus disorder prediction 1 28 - -
Vimu3g00922 108 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 54 90 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00922 Vimu-Chr3 11170949 11175276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00922 56 91 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 77.778 5.63e-15 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00922 K02969 - twl:119985309 68.1662