Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00920 ATGGACGCGACAATGGTGGTGCCTCCATGGTTCGAGCCACTCCTCACCACATCGTTTTTCAATGTGTGTCGCGTTCATGGAGATGCTGCGAGAAGCGAATGTAACATGTTTTGTTTGGATTGTAATAACGAGGATGCGTTTTGCTTCTATTGCCGATCCTCGCGACACAAAGATCACCGAGTGATTCAGATAAGGCGATCTTCGTATCACGATGTGGTGAGGGTGTCGGAAATTCAGAAGGTTTTGGACATCAGTGGAGTGCAAACTTATGTGATTAACAGTGCCAGAGTTTTGTTTCTGAACGAGAGGCCTCAACCCAAGTCAGGGAAAGGCGTTGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGGTTCTGTTCTTTGGGGTGTAAGGGCATGTCAAGGAGATTGGTTTCTTCAAGGCATCAACAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGACATGTACCCGGCCACGCCTTCTCCACCTGCTTCAAACGCAAGGCGAAGAAAAGGCATTCCTCACAGGGCACCTTTTGCCTCCTAA 561 0.4795 MDATMVVPPWFEPLLTTSFFNVCRVHGDAARSECNMFCLDCNNEDAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKGMSRRLVSSRHQQEEELREGSQQDMYPATPSPPASNARRRKGIPHRAPFAS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00920 186 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 184 - -
Vimu3g00920 186 MobiDBLite consensus disorder prediction 145 186 - -
Vimu3g00920 186 Pfam PLATZ transcription factor 65 135 IPR006734 -
Vimu3g00920 186 SUPERFAMILY B-box zinc-binding domain 21 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00920 Vimu-Chr3 11151464 11152828 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vimu3g00920 PLATZ 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00920 - - gmx:100809455 346.665