Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00910 ATGGCCGCTCCCGCGACGGTCGCCGCAACGCAGGCTTCACTTTACGTTGGAGATCTTCACCCTGACGTCACTGACACCCAATTATTCCTGGCCTTCCGGGAATTCGAAAGCCTCTCTTCCGTTCGCGTCTGCAGGGATTCCATGACGAAGACGTCGCTCCGTTACGGTTACGTCAACTTTATGTCTCAGCAAGACGCAATTCGAGCTATCAAGGTTAAAAATAATTCTTATCTCTTTGGAAAAGTGATGAGGGTCATGTGGTCACATCGCGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCAATAGATAATGCGGTGCTACATGATTTATTTCAAAAATATGGGAATGTTTTGTCCAGCAAAGTAGTCGTGTATGACGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAGTGCCATTGAGAACCTGAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTGTGCCTGGTAATGATTCCAAGTATACAAATTTGTACATTAAAAACTTGGATTCGGATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCCCTTTTGGAAAAATTATTAGCTTGGCTATTGCAAAGGATGACAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAGGCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAACGGATCGCAATTTGGTTCAAAGAATCTTTATGTTGCTAGGGCACAGAAGAAGGCTGAACGTGAGCAAATCTTGCATAATCAATTTGAGGAAAAACGCAAGGAGCAAATACTGAAATCAAAGGCCTCTAATCTTTACGTAAAGAACATTGATGACGCTGTTAGTGAAAAAGAACTACGAGTTCTGTTTAGTTCATGTGGCAGAATAACTTCTGTAAAAGTTATGCGAAATGAAAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCTGAGGAGGCTAATAAAGCTGTGAGCACTTTTTATGGATGCATGTTCCATGGTAAGCCACTGTATATTGCTTTCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCCACTATGCACCACAACAAGCACGATTGAACGGATCTTCTGCCGCAGTTATCCCTGGTGGTTTTTCATCTTTCTTCTATCCAAATGTTACTTCACATATGCTTCAATCTGGGCTTTTGTATCAACCTCTGGGATTGGGACCAGGATGGAGGGCTAATGACTTTACGCTTCCTACTAGATCATTTCAACAATCACAGGTTCCTATTGGGAAGGATGAATGGGCATACGAATTCAGTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAACTGCAACACTATTATCAGCCGCTGGACTCAAGAGAGTACCTGACAGCTTAGCTGCGAAGACTCCAGGAATGCTTATGGAGAGACAGTTCCTGCGTAAGTGA 1512 0.4319 MAAPATVAATQASLYVGDLHPDVTDTQLFLAFREFESLSSVRVCRDSMTKTSLRYGYVNFMSQQDAIRAIKVKNNSYLFGKVMRVMWSHRDPNARKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIENLNGSTVRDKQIYVGKFVRKGDRIVPGNDSKYTNLYIKNLDSDITEALLQEKFSPFGKIISLAIAKDDNGLSKGFAFVNYDRPDDARKAMEAMNGSQFGSKNLYVARAQKKAEREQILHNQFEEKRKEQILKSKASNLYVKNIDDAVSEKELRVLFSSCGRITSVKVMRNEKGISKGFGFVCFSNPEEANKAVSTFYGCMFHGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSSAAVIPGGFSSFFYPNVTSHMLQSGLLYQPLGLGPGWRANDFTLPTRSFQQSQVPIGKDEWAYEFSGKSSLWCIYPATATLLSAAGLKRVPDSLAAKTPGMLMERQFLRK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00910 503 CDD RRM4_I_PABPs 294 371 - -
Vimu3g00910 503 FunFam Polyadenylate-binding protein 4 99 - -
Vimu3g00910 503 Gene3D - 4 100 IPR012677 -
Vimu3g00910 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Vimu3g00910 503 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 391 IPR006515 GO:0003723
Vimu3g00910 503 FunFam Poly(A) binding protein cytoplasmic 1 like 286 375 - -
Vimu3g00910 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Vimu3g00910 503 Coils Coil 263 283 - -
Vimu3g00910 503 FunFam Polyadenylate-binding protein 101 181 - -
Vimu3g00910 503 SUPERFAMILY RNA-binding domain, RBD 181 274 IPR035979 GO:0003676
Vimu3g00910 503 Gene3D - 273 381 IPR012677 -
Vimu3g00910 503 Gene3D - 180 272 IPR012677 -
Vimu3g00910 503 FunFam Polyadenylate-binding protein 182 276 - -
Vimu3g00910 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Vimu3g00910 503 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vimu3g00910 503 SMART rrm1_1 13 86 IPR000504 GO:0003723
Vimu3g00910 503 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vimu3g00910 503 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vimu3g00910 503 Gene3D - 101 179 IPR012677 -
Vimu3g00910 503 PANTHER RNA BINDING PROTEIN 12 77 - -
Vimu3g00910 503 SMART rrm2_1 295 367 IPR003954 GO:0003676
Vimu3g00910 503 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vimu3g00910 503 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vimu3g00910 503 SUPERFAMILY RNA-binding domain, RBD 13 178 IPR035979 GO:0003676
Vimu3g00910 503 SUPERFAMILY RNA-binding domain, RBD 292 382 IPR035979 GO:0003676
Vimu3g00910 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Vimu3g00910 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vimu3g00910 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vimu3g00910 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Vimu3g00910 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00910 Vimu-Chr3 11040717 11044732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00910 12 432 Eukaryotic Initiation Factors Gene Family AT2G36660 59.716 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00910 K13126 - gmx:100798828 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00910 3 11040717 11044732 Vimu3g00910 3 11040717 11044732 ECH
Vimu6g02427 6 21198511 21201653 Vimu3g00910 3 11040717 11044732 PCT