Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00893 ATGGGGGACAAGCACCATCTCGACGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGTGGCTACCACGCTATCCGAATCGGCGACACCTTCAACGCCGGTCGCTACGTTGTTCAGTCTAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACATCAAACATTCTAGGTATGTGGCTTTGAAGGTTCAGAAGAGTGCTCAGCACTATACCGAGGCGGCCATGGATGAGATAACGATTTTGCAACAGATTTCGGAGGGAGACCCTGACGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCCAATGGGCAGCATGTCTGCATGGTGTTTGAGTACCTTGGGGACAATCTTTTGACGCTTATTAAGTACTCTGATTACCGTGGGTTGCCTATCGCCATGGTTAAGGAAATTTGCTTTCATATTCTGGTTGGATTGGATTACTTGCACAAACAGCTTTCTATCATACATACTGACTTGAAGCCTGAAAACATCCTGCTTTTGTCGATGATTGATCCATCTAAGGATCCTCGGAAGTCTGGGGCGCAGCTTATTCTTCCTAATAGTAAGGACAAGATGGTGCTAGAGTCGTCAGGTGTGAAAGATACGAAGATGTTGAATGGGGATTTGGTTATGAATCACAAGAAGAAGATTAAGAGAAAAGCTAAACAAGCAGCCCATGGTTGTTTTGAGAAGGAAGTTTCTGATGGAGTTGAGGGTAATCCTGAAACTTCTGGGGCTGTGGAGTCGTCTCCTAATGCGAGTTCTACAAGGGCTTCCAGTTCTGCAGGAACTAGTAGGTTATCGGATGCTGATGGAACAAAGTTGAAAGAGCAGGGTAACAAAAGAGGAAGCCGATCAATGAGACAGAAGCTGCTGGCATCAGTTGATCTCAAGTGCAAGTTAGTGGACTTTGGTAATGCCTGCTGGACATATAAACAGTTTACTAATGATATCCAGACAAGACAGTATCGGTGCCCAGAGGTGATTCTTGGGTCAAAATATTCTACGTCTGCCGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGACGAGTTTAGTTTGCGTGCTGTTTACTTATGCAACTTCTTGGATGTTCTTATTCTTTCCAAGGACGACATAGACCACTTAGCATTAATGATGGAACTTCTTGGAACGATGCCACGTAAGATAGCACTAGGGGGGCGTTATTCCCGTGATTTCTTTAATAGATATGGTGATTTAAGGCACATCCGGCGATTGCGATTCTGGCCCTTGAATAAAGTCCTCATGGAGAAGTACGATTTCAGTGAGAAAGATGCAAATGATTTGACGGACTTTTTGGTTCCTATTCTTAATTTTGTTTCCGAAAAGCGGCCTACAGCTGGTCAGTGTCTTCTGCATCCTTGGATCAATGGAGCTCCACGTCTTTTGGAGCCATCCGTGTCTTCTAATCACAACCCAGCTGCTGAAACTGCTGTTTTGGATCAGAAGAAAAGGGAAAAAGATGAGAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGTTATCAATTCAGATTCTAAATCACTGATGCAATCACCATCAAAGAAAGCTTTCCAATCCACCCAGCAGTAG 1692 0.4527 MGDKHHLDDSSDFTSEDEGTEDYRRGGYHAIRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDIKHSRYVALKVQKSAQHYTEAAMDEITILQQISEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIAMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAQLILPNSKDKMVLESSGVKDTKMLNGDLVMNHKKKIKRKAKQAAHGCFEKEVSDGVEGNPETSGAVESSPNASSTRASSSAGTSRLSDADGTKLKEQGNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEFSLRAVYLCNFLDVLILSKDDIDHLALMMELLGTMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDLTDFLVPILNFVSEKRPTAGQCLLHPWINGAPRLLEPSVSSNHNPAAETAVLDQKKREKDEREAMEAGMGNIVINSDSKSLMQSPSKKAFQSTQQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00893 563 ProSiteProfiles Protein kinase domain profile. 42 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00893 563 MobiDBLite consensus disorder prediction 247 302 - -
Vimu3g00893 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vimu3g00893 563 MobiDBLite consensus disorder prediction 1 21 - -
Vimu3g00893 563 MobiDBLite consensus disorder prediction 518 534 - -
Vimu3g00893 563 SUPERFAMILY Protein kinase-like (PK-like) 36 508 IPR011009 -
Vimu3g00893 563 FunFam CMGC/SRPK protein kinase 28 127 - -
Vimu3g00893 563 Gene3D Transferase(Phosphotransferase) domain 1 125 497 - -
Vimu3g00893 563 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Vimu3g00893 563 Pfam Protein kinase domain 307 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00893 563 Pfam Protein kinase domain 42 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00893 563 MobiDBLite consensus disorder prediction 258 283 - -
Vimu3g00893 563 FunFam Serine/threonine-protein kinase SRPK-like protein 304 496 - -
Vimu3g00893 563 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 12 521 - -
Vimu3g00893 563 MobiDBLite consensus disorder prediction 506 563 - -
Vimu3g00893 563 MobiDBLite consensus disorder prediction 541 563 - -
Vimu3g00893 563 Gene3D Phosphorylase Kinase; domain 1 18 124 - -
Vimu3g00893 563 MobiDBLite consensus disorder prediction 285 299 - -
Vimu3g00893 563 SMART serkin_6 42 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00893 563 CDD STKc_SRPK 31 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00893 Vimu-Chr3 10791452 10798312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00893 7 547 EF-hand Containing Proteins AT5G22840 66.667 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vimu3g00893 Pkinase 2.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00893 K08832 - gmx:100803070 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00893 3 10791452 10798312 Vimu3g00893 3 10791452 10798312 ECH